Table 2 Description of the parameters associated with the intragenomic variant divergence CSV/XLSX file.
From: A curated bacterial and archaeal 16S rRNA Gene Oral Sequences dataset
Parameter | Description |
|---|---|
gbid | Genbank identifier or identifiers, and/or HOMD identifier |
qseqid | Query sequence identifier |
sseqid | Subject sequence identifier |
pident | Identity percentage (percentage of identical matches) |
qcovs | Query coverage percentage |
length | Alignment length |
mismatch | Number of mismatched bases |
gapopen | Number of gap openings |
qstart | Start position in the query sequence |
qend | End position in the query sequence |
sstart | Start position in the subject sequence |
send | End position in the subject sequence |
evalue | Expect value (E-value) |
bitscore | Bit-score of the alignment |
