Table 4 List of the 61 core genes extracted from fungal genomes using the UFCG pipeline to generate the phylogenetic tree, along with their corresponding functions and identifiers sourced from the Saccharomyces Genome Database (SGD, www.yeastgenome.org) and UniProt (www.uniprot.org).
Gene | Function | SGD | UniProt |
|---|---|---|---|
ACT1 | Actin | YFL039C | P60010 |
ATP6 | F1F0 ATP synthase subunit | Q0085 | P00854 |
BMS1 | Ribosome biogenesis protein | YPL217C | Q08965 |
BRE2 | COMPASS component | YLR015W | P43132 |
CCT8 | Chaperonin-containing T-complex subunit | YJL008C | P47079 |
CMD1 | Calmodulin | YBR109C | P06787 |
COB | Cytochrome b | Q0105 | P00163 |
COX1 | Cytochrome c oxidase subunit | Q0045 | P00401 |
COX2 | Cytochrome c oxidase subunit | Q0250 | P00410 |
COX3 | Cytochrome c oxidase subunit | Q0275 | P00420 |
DIP2 | U3 small nucleolar RNA-associated protein 12 | YLR129W | Q12220 |
DPH5 | Diphthine methyl ester synthase | YLR172C | P32469 |
DYS1 | Deoxyhypusine synthase | YHR068W | P38791 |
ELP3 | Elongator complex protein 3 | YPL086C | Q02908 |
ESF1 | Pre-rRNA-processing protein | YDR365C | Q06344 |
FAP7 | Adenylate kinase isoenzyme 6 homolog | YDL166C | Q12055 |
FRS1 | Phenylalanine–tRNA ligase beta subunit | YLR060W | P15624 |
HEM12 | Uroporphyrinogen decarboxylase | YDR047W | P32347 |
HIS4 | Histidine biosynthesis trifunctional protein | YCL030C | P00815 |
HIS7 | Imidazole glycerol phosphate synthase | YBR248C | P33734 |
ILV1 | Threonine dehydratase | YER086W | P00927 |
KRE33 | RNA cytidine acetyltransferase | YNL132W | P53914 |
MCM7 | Mini-chromosome maintenance complex subunit | YBR202W | P38132 |
MET6 | 5-methyltetrahydropteroyltriglutamate–homocysteine methyltransferase | YER091C | P05694 |
MIP1 | DNA polymerase gamma | YOR330C | P15801 |
MRPL19 | 54S ribosomal protein L19 | YNL185C | P53875 |
MSF1 | Phenylalanine–tRNA ligase | YPR047W | P08425 |
MSS51 | Mitochondrial splicing suppressor protein 51 | YLR203C | P32335 |
MVD1 | Diphosphomevalonate decarboxylase | YNR043W | P32377 |
NCS6 | Cytoplasmic tRNA 2-thiolation protein 1 | YGL211W | P53088 |
NDI1 | NADH-ubiquinone reductase | YML120C | P32340 |
NOG1 | Nucleolar GTP-binding protein 1 | YPL093W | Q02892 |
NOP14 | Nucleolar complex protein 14 | YDL148C | Q99207 |
OLI1 | F0 ATP synthase subunit | Q0130 | P61829 |
PAH1 | Phosphatidate phosphatase | YMR165C | P32567 |
PGK1 | Phosphoglycerate kinase | YCR012W | P00560 |
POL2 | DNA polymerase epsilon catalytic subunit A | YNL262W | P21951 |
PRT1 | Eukaryotic translation initiation factor 3 subunit B | YOR361C | P06103 |
RAD2 | DNA repair protein | YGR258C | P07276 |
RLI1 | Translation initiation factor | YDR091C | Q03195 |
RPB2 | DNA-directed RNA polymerase II core subunit | YOR151C | P08518 |
RPF2 | Ribosome biogenesis protein | YKR081C | P36160 |
RPN1 | 26S proteasome regulatory subunit | YHR027C | P38764 |
RPO21 | DNA-directed RNA polymerase II core subunit | YDL140C | P04050 |
RPP0 | 60S acidic ribosomal protein P0 | YLR340W | P05317 |
SDA1 | Severe depolymerization of actin protein 1 | YGR245C | P53313 |
SEC. 21 | Coatomer subunit gamma | YNL287W | P32074 |
SEC. 26 | Coatomer subunit beta | YDR238C | P41810 |
SPB1 | 27S pre-rRNA (guanosine(2922)-2’-O)-methyltransferase | YCL054W | P25582 |
TEF1 | Translation elongation factor EF-1 alpha | YPR080W | P02994 |
TIF5 | Eukaryotic translation initiation factor 5 | YPR041W | P38431 |
TIM44 | Mitochondrial import inner membrane translocase subunit | YIL022W | Q01852 |
TOP1 | DNA topoisomerase 1 | YOL006C | P04786 |
TRM1 | tRNA (guanine(26)-N(2))-dimethyltransferase | YDR120C | P15565 |
TRP3 | Multifunctional tryptophan biosynthesis protein | YKL211C | P00937 |
TSR1 | Ribosome maturation factor | YDL060W | Q07381 |
TUB1 | Alpha-tubulin | YML085C | P09733 |
TUB2 | Beta-tubulin | YFL037W | P02557 |
UTP21 | U3 small nucleolar RNA-associated protein 21 | YLR409C | Q06078 |
VMA1 | V-type proton ATPase catalytic subunit A | YDL185W | P17255 |
ZPR1 | Zinc finger protein | YGR211W | P53303 |
