Table 2 Assessment of Hi-C library quality according to the ratio of read pairs with valid interaction.
From: Chromosome-level genome assembly for clubrush (Scirpus × mariqueter) endemic to China
Type | Number | Ratio(%) |
|---|---|---|
Total Unique Mapped | 63,995,689 | 100% |
Valid Interaction | 61,079,736 | 95.44 |
Invalid Interaction | 2,915,953 | 4.56 |
Dangling End Pairs | 491,450 | 0.77 |
Re-ligation Pairs | 832,928 | 1.30 |
Self-cycle Pairs | 473,455 | 0.74 |
Fragment Internal Pairs | 1,118,120 | 1.75 |
