Table 4 Summary of annotated repetitive elements in the genomes of V. bohemica and V. conica.
From: Chromosome-level genome assemblies of Verpa bohemica and Verpa conica
Category | V. bohemica | V. conica | ||||
|---|---|---|---|---|---|---|
20020 (bp) | 20124 (bp) | 21108 (bp) | 21110 (bp) | 21117 (bp) | 21120 (bp) | |
SINEs | 0 | 0 | 0 | 0 | 0 | 1,636 |
LINEs | 1,037,777 | 1,020,503 | 724,392 | 400,259 | 449,302 | 512,372 |
LTR elements | 1,169,487 | 958,057 | 1,274,386 | 803,231 | 342,475 | 459,339 |
DNA transposons | 119,490 | 111,883 | 6,376 | 105,255 | 16,174 | 58,947 |
Rolling-circles | 0 | 0 | 0 | 152,392 | 0 | 63,004 |
Unclassified | 2,173,484 | 1,638,865 | 1,785,491 | 2,839,232 | 3,379,084 | 2,982,664 |
Small RNA | 1,605 | 19,572 | 138,054 | 104,193 | 56,837 | 70,324 |
Satellites | 7,266 | 13,109 | 7,024 | 0 | 0 | 0 |
Simple repeats | 0 | 4,217 | 0 | 0 | 5,705 | 0 |
Total (ratio) | 4,509,109 (10.11%) | 3,766,206 (8.54%) | 3,935,723 (8.86%) | 4,404,562 (9.61%) | 4,249,577 (9.38%) | 4,146,650 (9.21%) |
