Table 3 Statistics of transposable elements classification results.
Type | RepBase TEs | TE Proteins | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | % in Genome | Length (bp) | %in Genome | Length (bp) | % in Genome | Length (bp) | % in Genome | |
DNA | 239,426,611 | 15.21 | 19,847,940 | 1.26 | 238,127,438 | 15.12 | 378,811,106 | 24.06 |
LINE | 72,452,234 | 4.60 | 49,458,707 | 3.14 | 57,422,878 | 3.65 | 93,647,041 | 5.95 |
SINE | 8,274,232 | 0.53 | 0 | 0.00 | 9,358,377 | 0.59 | 16,269,313 | 1.03 |
LTR | 68,333,145 | 4.34 | 41,761,636 | 2.65 | 88,049,628 | 5.59 | 123,305,867 | 7.83 |
Satellite | 40,674,852 | 2.58 | 0 | 0.00 | 8,332,718 | 0.53 | 47,566,589 | 3.02 |
Simple_repeat | 0 | 0.00 | 0 | 0.00 | 86,680 | 0.01 | 86,680 | 0.01 |
Other | 34,198 | 0.00 | 0 | 0.00 | 0 | 0.00 | 34,198 | 0.00 |
Unknown | 3,758,066 | 0.24 | 6,906 | 0.00 | 69,901,375 | 4.44 | 72,979,993 | 4.64 |
Total | 411,057,846 | 26.11 | 111,027,949 | 7.05 | 464,081,119 | 29.48 | 691,569,851 | 43.92 |
