Table 4 Annotation of repeat sequences for the assembled allotetraploid oyster genome.
From: Chromosomal-level genome assembly of an allotetraploid oyster
Class | Type | Number | Length (bp) | % in Genome |
|---|---|---|---|---|
Transposable elements | DIRS | 216 | 65,777 | 0.0054 |
LINE | 89,279 | 28,303,157 | 2.30 | |
LTR | 391,338 | 128,886,291 | 10.48 | |
SINE | 4,242 | 423,085 | 0.034 | |
DNA | 1,029,960 | 330,341,186 | 26.85 | |
srpRNA | 1 | 289 | 0.000023 | |
Unknown | 123 | 12,545 | 0.0010 | |
Total | 1,515,159 | 488,032,330 | 39.67 | |
Tandem repeats | microsatellite (1–9 bp units) | 644,644 | 13,711,047 | 1.11 |
minisatellite (10–99 bp units) | 205,033 | 25,830,275 | 2.10 | |
satellite (> = 100 bp units) | 50,088 | 43,674,118 | 3.55 | |
Total | 899,765 | 83,215,440 | 6.76 |
