Table 6 Gene prediction for the allotetraploid oyster genome using three methods.
From: Chromosomal-level genome assembly of an allotetraploid oyster
Method | Gene set | Species | Number |
|---|---|---|---|
Ab initio | Augustus | — | 50,539 |
SNAP | — | 85,354 | |
Homology-based | GeMoMa | C. angulata (GCA_025765675.3) | 63,485 |
C. ariakensis (GCA_020567875.1) | 62,945 | ||
C. virginica (GCF_002022765.2) | 51,353 | ||
D. rerio (GCA_049306965.1) | 20,585 | ||
RNAseq | GeneMarkS-T | — | 45,019 |
PASA | — | 22,259 | |
Integration | EVM | — | 58,330 |
