Abstract
Metal-organic frameworks (MOFs) play a pivotal role in modern material science, offering unique properties such as flexibility, substantial pore space, distinctive structure, and large surface area. Recently, zinc-based MOFs have attracted significant attention, particularly in the biomedical arena, owing to their versatile applications in drug delivery, biosensing, and cancer imaging. However, there remains a crucial need to explore and understand the structural properties of zinc silicate-based MOFs to fully exploit their potential in various applications. The objective of this study is to address this need by employing topological modeling techniques to characterize zinc silicate networks. Utilizing connection number concept of chemical graph theory and novel AL molecular descriptors, we aim to investigate the structural intricacies of these MOFs. More precisely, zinc silicate-based MOF networks are topologically modeled via novel AL topological indices, and derived mathematical closed form formulae for them. By comparing experimental and calculated values and constructing linear regression models, the predictive capabilities of the proposed descriptors are evaluated. Specifically, the performance of derived topological indices against the physico-chemical properties of octane isomers is assessed, which provide valuable insights into their predictive potential. The findings of this study demonstrated the potential of novel AL indices in predicting a wide range of important physico-chemical properties, further enhancing their practicality in materials science and beyond.
Similar content being viewed by others
Introduction
Metal organic frameworks (MOFs) are unique classes of porous chemical materials characterized by a high pore volume, a unique structure, a huge surface area, and exceptional chemical stability. The broad range of applications of MOFs, such as environmental hazards, biocompatibility, toxicity, and biomedical applications, as well as heterogeneous catalysis, gas purification, and division, make them distinct1. Their vast surface area, elevated porosity, adaptable structures, and simple chemical functionalization have made them attractive choices for pharmaceutical delivery, heterogeneous catalysts, nitric oxide storage, imaging and sensing, and illness diagnosis. It is interesting to see how the research and application of versatile MOFs have recently found a desirable and probable location in the field of health care2. In biological applications, harmless MOFs are believed to work better than hazardous MOFs, especially in systems for delivering medicines. Among themost crucial elements of this industry's success is drug delivery3,4. As shown in Fig. 1, the MOF is composed of organic molecules and ionized metal linkers5, a substance that is extremely permeable and has a large surface area.
Graph theory offers a plenty of valuable tools for chemists and materials scientists, notably the topological indices. Using graph theory principles, molecular compounds are commonly represented through molecular graphs, which depict an element's structure as defined in chemistry. Chemical bonds are represented by edges in these graphs, while atoms are represented by vertices. The interdisciplinary field of cheminformatics integrates details, chemistry, and mathematics technology to explore the physical properties of chemical compounds, marking a significant advancement in scientific research. Cheminformatics provides a framework for mathematically modeling molecules based on their physical properties, such as boiling point etc. Milan Randic and NenadTrinajstic were among the first to explore chemical graph theory6. The process of transforming chemical information into meaningful numerical data is referred to as molecular descriptors or topological indices. These indices, which quantify various characteristics like connectivity, boiling point, stability, and melting point, are numeric parameters associated with molecular graphs representing chemical compounds. Topological indices seize the topology of the structures of molecules and often exhibit mathematical properties as graph invariants. They play a key role in quantitative structure–activity relationship (QSAR) studies, offering insights into the biological properties based on chemical structures.
While researching the boiling point of paraffin in 1947, Wiener presented the idea of the topological index, which he named as the Wiener index7. M. Darafsheh8 devised various methods for computing the Wiener index and Szeged index across multiple graphs. A. Ayache and A. Alameri9 computed topological indices for mk-graphs. Wei Gao et al.10 explored specific eccentricity-version topological indices within the cycloalkane family. Ullah and Zaman conducted extensive investigations into degree-based topological descriptors across diverse molecular structures11,12,13,14,15,16,17,18,19,20,21,22,23. For further inquiries into the topological characterization of molecular structures and microstructures, references24,25,26,27,28,29,30,31,32 can be consulted.
The original inventor of the degree-based topological index was Milan Randic6.The degree sum of the end vertices of the edges in a graph G is the definition of the first Zagreb index, i.e.\({\text{M}}_{1}\left(\text{G}\right)=\sum_{\text{uv}\in \left(\text{G}\right)}{(\text{d}}_{\text{u}}{+\text{ d}}_{\text{v}})\). Ivan Gutman introduced the second version of Zagreb index as the degree product of end vertices of all edges of the under consideration graph \(\text{G}\)33, i.e. \({\text{M}}_{2}\left(\text{G}\right)=\sum_{\text{uv}\in \left(\text{G}\right)}{(\text{d}}_{\text{u }}\times {\text{d}}_{\text{v}})\). In 1998, Estrade et al.34 Proposed \(\text{ABC}\) index and defined it as,\(\text{ABC}\left(\text{G}\right)={\sum }_{uv\in (G)}\sqrt{\frac{{d}_{u}+{d}_{v}-2}{{d}_{u}\times {d}_{v}}}\). In 2010, Gorbani et al.35 proposed \({\text{ABC}}_{4}\) index and defined it as,\({\text{ABC}}_{4}=\sqrt{\frac{{s}_{u}+{s}_{v }-2}{{s}_{u}\times {s}_{v}}}\).Furtula et al. Introduced another Zagreb type index in 2010,defined as,\(\text{AZI}\left(\text{G}\right)=\sum_{uv\in E(G)}{(\frac{{d}_{u}{d}_{v}}{{d}_{u}+{d}_{v}-2})}^{3}\). The prediction power is this index is better than \(\text{ABC}\) index. Vukievi36introduced the first \(\text{GA}\) index as,\(\text{GA}\left(\text{G}\right)=\sum_{\text{uv}\in \text{E}(\text{G})}\frac{2\sqrt{{d}_{u}\times {d}_{v}}}{{d}_{u}+{d}_{v}}\). The lower and upper limits on \(\text{GA}\) index were explained by Das et al.37. Recently, Graovac et al.38 introduced \({\text{GA}}_{5}\) index which is expressed as, \({\text{GA}}_{5}=\sum_{\text{uv}\in \text{E}(\text{G})}\frac{2\sqrt{{S}_{u}{\times S}_{v}}}{{S}_{u}+{S}_{v}}\).
In mathematical chemistry, topological indices come in several forms, such as distance-based indices39,40,41,42,43,44, vertex-degree-based indices45,46,47,48,49,50,51,52,53, spectrum-based indices54,55,56,57,58, and connection-based indices59,60,61,62,63,64. Recently, new AL indices' possible utilisation as molecular descriptors was investigated in65. A more thorough comprehension of the molecular network structures is offered by these descriptors.The Connection-based Multiplicative Zagreb Indices of dendrimer nanostars were proposed by Sattar et al. in 202117. For further details on the topological characterization of zinc-based MOFs, readers are referred to66,67,68.
Motivated by the importance and wide applications of zinc silicate-based MOFs, this study employs topological modeling techniques to characterize zinc silicate networks in order to explore and understand the structural properties of zinc silicate-based MOFs to fully exploit their potential in various applications. Utilizing connection number concept of chemical graph theory and novel AL molecular descriptors, we aim to investigate the structural intricacies of these MOFs.
To be more specific, zinc silicate-based MOF networks are modelled topologically using novel AL topological indices, and formulas in closed form are derived mathematically. The predictive potential of the suggested descriptors is assessed by building linear regression models and comparing computed and experimental results. In particular, the efficacy of generated topological indices in relation to the physico-chemical characteristics of octane isomers is evaluated, offering significant perspectives on their predictive capacity. The results of this work can greatly enhanced the usefulness of AL indices in materials science and other fields by demonstrating their ability to predict a broad range of significant physico-chemical properties.
As, the structural flexibility and substantial pore space of zinc silicate-based MOFs make them ideal candidates for encapsulating and releasing pharmaceutical compounds in a controlled manner. Our topological indices can predict the stability and efficiency of these MOFs in drug delivery applications, ensuring optimal design and performance. Also, by employing the novel AL indices, researchers can predict and enhance the interaction of MOFs with target molecules, improving the efficacy of biosensing devices in medical diagnostics and environmental monitoring. Furthermore, by applying our topological modeling techniques, we can predict the gas adsorption capacity and selectivity of zinc silicate-based MOFs, guiding the design of materials for energy and environmental applications.
Preliminaries
Given a graph G = (T (G), W (G)) with T (G) as the vertex set and W (G) as the edge set, the number of vertices that are two distances away from a given vertex is its connection number. If we assume that ε = jk, where j and k are edges within T (G), then the innovative AL indices have the following definition:
Definition 2.1
\({AL}_{1}\) is expressed as follows if G = (T(G),W(G));
The CNs associated with vertex j are represented by \({Y}_{2}\left(j\right)\).
Definition 2.2
For graph G, the index \({AL}_{2}\left(G\right)\) is as follows:
where \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\) are respectively the CNs of vertices ‘j’ and ‘k’.
Definition 2.3
For a graph G, then \({AL}_{3}\left(G\right)\) is formulated as;
where \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\) are respectively the CNs of vertices ‘j’ and ‘k’.
Definition 2.4
For a graph G, then \({AL}_{4}\left(G\right)\) is formulated as;
where \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\) are respectively the CNs of vertices ‘j’ and ‘k’..
Definition 2.5
For a graph G, then \({AL}_{5}\left(G\right)\) is formulated as;
where \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\) are respectively the CNs of vertices ‘j’ and ‘k’..
Definition 2.6
For a graph G, then \({AL}_{6}\left(G\right)\) is formulated as;
where \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\) are respectively the CNs of vertices ‘j’ and ‘k’..
Definition 2.7
For a graph G, then \({AL}_{7}\left(G\right)\) is formulated as;
where \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\) are respectively the CNs of vertices ‘j’ and ‘k’..
Definition 2.8
For a graph G, then \({AL}_{8}\left(G\right)\) is formulated as;
where \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\) are respectively the CNs of vertices ‘j’ and ‘k’..
Results and discussion
Mathematical formulation of novel AL indices for zinc silicate MOF structures
This section presents mathematical modeling and derivations of \({AL}_{1}\), \({AL}_{2}\), \({AL}_{3}\), \({AL}_{4}\), \({AL}_{5}\), \({AL}_{6}\),\({AL}_{7} and{ AL}_{8}\) for the zinc silicate MOF structures of growth h. Given a molecular network of zinc silicate with growth h, denoted by τ = ZnSi(h), the cardinality of its edges and vertices is 85h + 55 and 70h + 46, respectively. Figures 2, 3 and 4 display the ZnSi connection-based structure for h = 1, 2 and 3. To keep things simple, ZnSi's structure is broken down into three parts: The Root, Stem, and Leaf structures.
-
1.
Root structure: four hexagons joined together so that their common vertex has Connection Number (CN) 8 and their two outer vertices have CN 2 for h \(\ge 1\) constitute a construction known as a Root structure.
-
2.
Stem structure: a four-hexagon structure called a "Stem structure" is one that is connected such that the number CN 8 appears on its common vertex and the number CN 2 appears for h \(\ge 2\) on its outer vertex.
-
3.
Leaf structure: referred to as the Leaf structure, a hexagon is one that is not a part of the Stem and Root structures of hexagons for h \(\ge 1\).
Theorem 3.1
Let the graph of growth for zinc silicate, \(\tau\)= ZnSi, have a growth rate of \(h\ge 1\). The \({AL}_{1}\) index is then provided by
Proof
Here \({Y}_{2}\left(a\right)\), indicates CNs. Equation (1) and Table 1 are used to obtain
Theorem 3.2
Let the growth rate on the graph of zinc silicate, \(\tau =\) ZnSi, be \(h\ge 1\). The \({AL}_{2}\) index is thus given by
Proof
Here \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\), represent the CNs of vertices 'j' and 'k,' respectively. Equation (2) and Table 2 are used to obtain
Theorem 3.3
On the zinc silicate graph, \(\tau\)= ZnSi, and let \(h\ge 1\) represent the growth rate. Thus, the \({AL}_{3}\) index is represented by
Proof
\({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\), respectively, stand for the CNs of vertices ‘j’ and ‘k’ in this case. By using Table 2 and Eq. (3), we get
Theorem 3.4
Let \(h\ge 1\) represent the growth rate on the zinc silicate graph with \(\tau\) = ZnSi. Accordingly, the \({AL}_{4}\) index is represented by
Proof
The CNs of vertices ‘j’ and ‘k’ in this instance are represented, respectively, by \({Y}_{2}\left(j\right)\) and \({Y}_{2}\left(k\right)\). By using Table 2 and Eq. (4), we get
Similarly, all the other AL indices, namely, AL4, AL5, AL6, AL7 and AL8 are derived mathematically. Table 3 below summarizes the obtained results for all the 8 AL indices.
Property prediction ability of the derived indices and discussion
Table 4 presents the numerically computed AL index values for Zinc Silicate MOFs, and Fig. 5 provides a graphical comparison of these indices. It is evident from both the table and the figure that AL3 index attains the highest value for ZnSi. Furthermore, there is a clear trend of increasing index values with increasing values of h.
To estimate the predictive ability in order to assess the possible utility and chemical applicability of these AL indices, we employed Octane Isomers dataset together with the associated experimental properties. In what follows, a comprehensive investigation of the predictive abilities and chemical applicability of AL topological indices is performed.
To assess how well a topological index works in modeling physico-chemical properties, regression analysis serves as a powerful tool53. Octane isomers, with their diverse structural characteristics including form, branching, and non-polar traits, offer an ideal test bed for such investigations. Their structural diversity ensures a wide range of experimental data availability, making octane isomers particularly suitable for statistical analysis. According to Randić and Trinajstić69, correlating theoretical constants with the experimental physicochemical characteristics of octane isomers is crucial to evaluating an invariant's predictive power70,71,72. In this work, we first calculated novel AL indices for 18 Octane Isomers and then correlated the calculated values with the experimental parameters to test the prediction power and practical usefulness of these indices. The experimental data were taken from the studies53,73. Similar to the methods outlined in "Mathematical formulation of Novel AL indices for zinc silicate MOF structures", the calculations of AL indices for these isomers have already been accomplished in a recent work 74.We have used the numerical values of AL indices for Octane Isomers obtained in74.
Using regression analysis, we looked into seven physico-chemical characteristics for each of the eighteen octane isomers. Origin, MATLAB, and Excel softwares were used for analysis and visualization of the results.
The correlations between the physico-chemical properties of the Octane Isomers and the AL indices are shown in Figs. 6, 7, 8, 9, 10, 11 and 12 (presented in supplementary information), and the values of correlation co-efficient are shown in Table 5. Interestingly, our findings reveal intriguing correlations: AL1 exhibits a robust connection (r = 0.86085) with the octane isomer entropy, while AL1, AL2, AL3, AL4, AL5, and AL7 show strong correlations (r = 0.83757, r = 0.86983, r = 0.79237, r = 0.8219, r = 0.79527 and r = 0.73139 respectively) with the Acentric Factor, with AL2 having the strongest correlation among them. As can be seen, AL2, AL4, and AL5 exhibit strong correlations (r = 0.72745, r = 0.71056, and r = 0.71138 respectively) with the HVAP, with AL2 showing the strongest correlation among them. Moreover, AL1, AL2, AL3, AL4, and AL5 show strong correlations (r = 0.76855, r = 0.791, r = 0.71274, r = 0.7683, and r = 0.74952 respectively) with the DHVAP, with AL2 emerging as the most predictive index. However, the Boiling Point, Critical Temperature, and Critical Pressure of the octane isomers have weak associations with the eight unique AL indices.
The strong performance of certain AL indices in predicting the properties of octane isomers can be attributed to their inherent sensitivity to molecular structure variations. Specifically, AL indices are designed to capture the topological and connectivity features of molecules, which are directly related to their physical and chemical properties. For instance, AL1's robust connection with octane isomer entropy suggests that this index effectively captures the complexity and disorder within the molecular structure, which is a key component of entropy. The ability of AL indices to encapsulate such intricate structural details likely contributes to their strong predictive capabilities. The high correlations between AL indices and the Acentric Factor, particularly AL2, indicate that these indices are sensitive to the asymmetry and deviations from ideal behavior in the molecules. The Acentric Factor is a measure of the non-sphericity of molecules, and the strong correlations suggest that AL indices can effectively represent such geometric and spatial characteristics. Similarly, the strong correlations with HVAP and DHVAP imply that AL indices can reflect intermolecular forces and the energy required for phase transitions. The HVAP and DHVAP are influenced by molecular interactions and bonding, which are well-represented by the topological features captured by AL indices.
However, the weaker associations with Boiling Point, Critical Temperature, and Critical Pressure might indicate that these properties are influenced by factors beyond the scope of topological indices alone, such as specific intermolecular interactions or external conditions that are not fully encapsulated by AL indices.
To sum up, the effectiveness of AL indices in predicting a range of physico-chemical properties underscores their utility in materials science, particularly for applications requiring detailed molecular insights. The development and refinement of such indices can lead to more accurate and comprehensive models for predicting molecular behavior, thus broadening their applicability across various scientific domains. While the properties of octane isomers are well-understood, our study leverages these principles to validate and showcase the effectiveness of novel AL indices. This validation is a crucial step in ensuring that these indices can be successfully applied to zinc silicate-based MOFs and other complex materials. By establishing a strong foundation with octane isomers, we enhance the robustness and applicability of AL indices to a broader range of materials in materials science and biomedicine.
Conclusion
In this study, the structural intricacies of the MOFs are investigated by utilizing connection number concept of chemical graph theory and novel AL molecular descriptors (AL1, AL2, AL3, AL4, AL5, AL6, AL7 and AL8). More precisely, zinc silicate-based MOF structures are topologically modeled via novel AL topological indices, and derived mathematical closed form formulae for them. By comparing experimental and calculated values and constructing linear regression models, we evaluated the predictive capabilities of the proposed descriptors. In particular, we evaluated the obtained topological indices' performance in relation to the physico-chemical characteristics of octane isomers, offering important information about their predictive capacity.
Our findings reveal significant correlations between the AL indices and the experimental properties. Notably, AL1 exhibits a strong correlation (r = 0.86085) with entropy. Additionally, AL1, AL2, AL3, AL4, AL5, and AL7 show robust correlations with the Acentric Factor, with AL2 having the highest correlation (r = 0.86983). AL2 also stands out in predicting HVAP and DHVAP properties, showing strong correlations (r = 0.72745 and r = 0.791, respectively). These results underscore the predictive power of the AL indices, particularly AL1 and AL2, in capturing key structural features that influence the physico-chemical properties. The successful application of these novel AL indices to octane isomers provides a robust validation of their utility, paving the way for their application to more complex materials like zinc silicate-based MOFs. This study highlights the potential of AL indices to predict critical physico-chemical properties, enhancing our understanding of MOF structures and their suitability for diverse applications in materials science and biomedicine. However, the weaker associations with Boiling Point, Critical Temperature, and Critical Pressure might indicate that these properties are influenced by factors beyond the scope of topological indices alone, such as specific intermolecular interactions or external conditions that are not fully encapsulated by AL indices.
We recognize that MOFs have unique structural and functional characteristics that may require additional or different descriptors for comprehensive modeling. As part of our ongoing research, we plan to expand our set of indices and explore additional properties that are specifically relevant to MOFs. This will include properties related to pore size distribution, surface area, and framework flexibility, among others. Furthermore, future research could benefit from the integration of machine learning techniques to improve the predictive power of the AL indices. The accuracy and robustness of the predictions could be improved by training models on larger datasets that include a variety of MOF structures and physico-chemical properties.
Data availability
All data generated or analyzed during this study are included in this article.
References
Valizadeh Harzand, F., Mousavi Nejad, S.N., Babapoor, A., Mousavi, S.M., Hashemi, S.A., Gholami, A., Chiang, W.-H., Buonomenna, M.G. & Lai, C.W. Recent Advances in Metal-Organic Framework (MOF) Asymmetric Membranes/Composites for Biomedical Applications, Symmetry (2023).
Yassue-Cordeiro, P. H. et al. 1 - Chitosan-based nanocomposites for drug delivery. In Inamuddin (eds Asiri, A. M. & Mohammad, A.) 1–26 (Woodhead Publishing, 2018).
Salahpour-Anarjan, F., Nezhad-Mokhtari, P. & Akbarzadeh, A. Chapter 3—Smart drug delivery systems. In Modeling and Control of Drug Delivery Systems (Azar, A.T. Ed.). 29–44 (Academic Press, 2021).
de Farias, R.F. 1—Oxides and phosphates. In Interface Science and Technology (de Farias, R.F. Ed.). 1–2 (Elsevier, 2023).
Gutman, I., Monsalve, J. & Rada, J. A relation between a vertex-degree-based topological index and its energy. Linear Algebra Appl. 636, 134–142 (2022).
Randic, M. Characterization of molecular branching. J. Am. Chem. Soc. 97, 6609–6615 (1975).
Wiener, H. Structural Determination of Paraffin Boiling Points. J. Am. Chem. Soc. 69, 17–20 (1947).
Darafsheh, M. R. Computation of topological indices of some graphs. Acta Appl. Math. 110, 1225–1235 (2010).
Ayache, A. & Alameri, A. Topological indices of the mk-graph. J. Assoc. Arab Univ. Basic Appl. Sci. 24, 283–291 (2017).
Gao, W., Chen, Y. & Wang, W. The topological variable computation for a special type of cycloalkanes. J. Chem. 2017, 6534758 (2017).
Ullah, A., Jabeen, S., Zaman, S., Hamraz, A. & Meherban, S. Predictive potential of K-Banhatti and Zagreb type molecular descriptors in structure–property relationship analysis of some novel drug molecules. J. Chin. Chem. Soc. 71, 250–276 (2024).
Ullah, A., Bano, Z. & Zaman, S. Computational aspects of two important biochemical networks with respect to some novel molecular descriptors. J. Biomol. Struct. Dyn. 42, 791–805 (2024).
Zaman, S., Yaqoob, H.S.A., Ullah, A. & Sheikh, M. QSPR analysis of some novel drugs used in blood cancer treatment via degree based topological indices and regression models. Polycycl. Arom. Compds. 1–17. https://doi.org/10.1080/10406638.2023.2217990 (2023).
Zaman, S., Ullah, A. & Shafaqat, A. Structural modeling and topological characterization of three kinds of dendrimer networks. Eur. Phys. J. E Soft Matter 46, 36 (2023).
Zaman, S. et al. Three-dimensional structural modelling and characterization of sodalite material network concerning the irregularity topological indices. J. Math. 2023, 1–9 (2023).
Zaman, S., Jalani, M., Ullah, A., Ali, M. & Shahzadi, T. On the topological descriptors and structural analysis of cerium oxide nanostructures. Chem. Pap. 77, 2917–2922 (2023).
Zaman, S., Jalani, M., Ullah, A., Ahmad, W. & Saeedi, G. Mathematical analysis and molecular descriptors of two novel metal–organic models with chemical applications. Sci. Rep. 13, 5314 (2023).
Ullah, A., Zaman, S., Hussain, A., Jabeen, A. & Belay, M. B. Derivation of mathematical closed form expressions for certain irregular topological indices of 2D nanotubes. Sci. Rep. 13, 11187 (2023).
Ullah, A., Zaman, S., Hamraz, A. & Muzammal, M. On the construction of some bioconjugate networks and their structural modeling via irregularity topological indices. Eur. Phys. J. E 46, 72 (2023).
Ullah Shamsudin, A., Zaman, S. & Hamraz, A. Zagreb connection topological descriptors and structural property of the triangular chain structures. Phys. Scr. 98, 025009 (2023).
Hakeem, A., Ullah, A. & Zaman, S. Computation of some important degree-based topological indices for γ- graphyne and Zigzag graphyne nanoribbon. Mol. Phys. 121, e2211403 (2023).
Zaman, S., Jalani, M., Ullah, A., Saeedi, G. & Guardo, E. Structural analysis and topological characterization of Sudoku nanosheet. J. Math. 2022, 1–10 (2022).
Ullah, A., Shamsudin, S., Zaman, A., Hamraz, G. & Saeedi, J. O. Caceres, network-based modeling of the molecular topology of Fuchsine acid dye with respect to some irregular molecular descriptors. J. Chem. 2022, 1–8 (2022).
Ullah, A., Zeb, A. & Zaman, S. A new perspective on the modeling and topological characterization of H-naphtalenic nanosheets with applications. J. Mol. Model. 28, 211 (2022).
Ullah, A., Qasim, M., Zaman, S. & Khan, A. Computational and comparative aspects of two carbon nanosheets with respect to some novel topological indices. Ain Shams Eng. J. 13, 101672 (2022).
Zhang, X., Aslam, A., Saeed, S., Razzaque, A. & Kanwal, S. Investigation for metallic crystals through chemical invariants, QSPR and fuzzy-TOPSIS. J. Biomol. Struct. Dyn. 1, 1. https://doi.org/10.1080/07391102.2023.2209656 (2023).
Zhong, J.-F., Rauf, A., Naeem, M., Rahman, J. & Aslam, A. Quantitative structure-property relationships (QSPR) of valency based topological indices with Covid-19 drugs and application. J. Arab. J. Chem. 14, 103240 (2021).
Iqbal, Z., Ishaq, M., Aslam, A., Aamir, M. & Gao, W. The measure of irregularities of nanosheets. Open Phys. 18, 419–431 (2020).
Khabyah, A. A., Zaman, S., Koam, A. N. A., Ahmad, A. & Ullah, A. Minimum Zagreb eccentricity indices of two-mode network with applications in boiling point and benzenoid hydrocarbons. Mathematics 10, 4 (2022).
Ullah, A., Shaheen, M., Khan, A., Khan, M. & Iqbal, K. Evaluation of topology-dependent growth rate equations of three-dimensional grains using realistic microstructure simulations. Mater. Res. Exp. 6, 026523 (2018).
Ullah, A. et al. Simulations of grain growth in realistic 3D polycrystalline microstructures and the MacPherson–Srolovitz equation. Mater. Res. Exp. 4, 066502 (2017).
Asad, U. et al. Neighborhood topological effect on grain topology-size relationship in three-dimensional polycrystalline microstructures. Chin. Sci. Bull. 58, 3704–3708 (2013).
Gutman, I. & Trinajstić, N. Graph theory and molecular orbitals. Total φ-electron energy of alternant hydrocarbons. Chem. Phys. Lett. 17, 535–538 (1972).
Das, K. C. Atom-bond connectivity index of graphs. Discrete Appl. Math. 158, 1181–1188 (2010).
Ghorbani, M. & Hosseinzadeh, M. A. Computing ABC4 index of nanostar dendrimers. Optoelectron. Adv. Mater. Rapid Commun. 4, 1419–1422 (2010).
Alaeiyan, M., Farahani, M. R. & Jamil, M. K. Computation of the fifth geometric-arithmetic index for polycyclic aromatic hydrocarbons PAHk, applied mathematics and nonlinear. Sciences 1, 283–290 (2016).
Husin, N. H., Hasni, R. & Du, Z. On extremum geometric-arithmetic indices of (molecular) trees. Match 78, 375–386 (2017).
Graovac, A., Ghorbani, M. & Hosseinzadeh, M. A. Computing fifth geometric-arithmetic index for nanostar dendrimers. J. Math. Nanosci. 1, 33–42 (2011).
Hayat, S. Distance-based graphical indices for predicting thermodynamic properties of benzenoid hydrocarbons with applications. Comput. Mater. Sci. 230, 112492 (2023).
Hayat, S., Khan, S., Khan, A. & Imran, M. Distance-based topological descriptors for measuring the π-electronic energy of benzenoid hydrocarbons with applications to carbon nanotubes. Math. Methods Appl. Sci. (2020).
Liu, J. B., Gu, J. J. & Wang, K. The expected values for the Gutman index, Schultz index, and some Sombor indices of a random cyclooctane chain. Int. J. Quantum Chem 123, e27022 (2022).
Liu, J.-B., Zhao, J., Min, J. & Cao, J. The Hosoya index of graphs formed by a fractal graph. J. Fractals 27, 1950135 (2019).
Arockiaraj, M., Klavzar, S., Clement, J., Mushtaq, S. & Balasubramanian, K. Edge distance-based topological indices of strength-weighted graphs and their application to coronoid systems, carbon nanocones and SiO(2) nanostructures. Mol. Inform. 38, e1900039 (2019).
Zaman, S., Kamboh, A., Ullah, A. & Liu, J.-B. Development of some novel resistance distance based topological indices for certain special types of graph networks. Phys. Scr. 98, 125250 (2023).
Hayat, S., Khan, M. A., Khan, A., Jamil, H. & Malik, M. Y. H. Extremal hyper-Zagreb index of trees of given segments with applications to regression modeling in QSPR studies. Alex. Eng. J. 80, 259–268 (2023).
Hayat, S. & Asmat, F. Sharp bounds on the generalized multiplicative first Zagreb index of graphs with application to QSPR modeling. Mathematics (2023).
Hayat, S., Arif, A., Zada, L., Khan, A. & Zhong, Y. Mathematical properties of a novel graph-theoretic irregularity index with potential applicability in QSPR modeling. Mathematics (2022).
Liu, J.-B., Ali, H., Shafiq, M. K., Dustigeer, G. & Ali, P. On topological properties of planar octahedron networks. Polycycl. Arom. Compds. 43, 755–771 (2023).
Raza, Z., Arockiaraj, M., Maaran, A., Kavitha, S. R. J. & Balasubramanian, K. Topological entropy characterization, NMR and ESR spectral patterns of coronene-based transition metal organic frameworks. ACS Omega 8, 13371–13383 (2023).
Paul, D., Arockiaraj, M., Jacob, K. & Clement, J. Multiplicative versus scalar multiplicative degree based descriptors in QSAR/QSPR studies and their comparative analysis in entropy measures. Eur. Phys. J. Plus 138, 323 (2023).
Arockiaraj, M. et al. Novel molecular hybrid geometric-harmonic-Zagreb degree based descriptors and their efficacy in QSPR studies of polycyclic aromatic hydrocarbons. SAR QSAR Environ. Res. 34, 569–589 (2023).
Mondal, S., De, N. & Pal, A. Topological indices of some chemical structures applied for the treatment of COVID-19 patients. J. Polycycl. Arom. Compds. 42, 1220–1234 (2022).
Mondal, S., De, N. & Pal, A. On neighborhood Zagreb index of product graphs. J. Mol. Struct. 1223, 129210 (2021).
Zaman, S. & Ullah, A. Kemeny’s constant and global mean first passage time of random walks on octagonal cell network. Math. Methods Appl. Sci. 46, 9177–9186 (2023).
Zaman, S., Mustafa, M., Ullah, A. & Siddiqui, M. K. Study of mean-first-passage time and Kemeny’s constant of a random walk by normalized Laplacian matrices of a penta-chain network. Eur. Phys. J. Plus 138, 770 (2023).
Yu, X., Zaman, S., Ullah, A., Saeedi, G. & Zhang, X. Matrix analysis of hexagonal model and its applications in global mean-first-passage time of random walks. IEEE Access 11, 10045–10052 (2023).
Yan, T., Kosar, Z., Aslam, A., Zaman, S. & Ullah, A. Spectral techniques and mathematical aspects of K4 chain graph. Phys. Scr. 98, 045222 (2023).
Kosar, Z., Zaman, S., Ali, W. & Ullah, A. The number of spanning trees in a K5 chain graph. Phys. Scr. (2023).
Sattar, A., Javaid, M. & Bonyah, E. Connection-based multiplicative Zagreb indices of dendrimer nanostars. J. Math. 2021, 2107623 (2021).
Ali, U., Javaid, M. & Alanazi, A.M. Computing analysis of connection-based indices and coindices for product of molecular networks. Symmetry (2020).
Usman, M. & Javaid, M. Connection-based Zagreb indices of polycyclic aromatic hydrocarbons structures. Curr. Org. Synth. https://doi.org/10.2174/1570179421666230823141758 (2023).
Raza, Z. Zagreb connection indices for some benzenoid systems. Polycycl. Arom. Compds. 42, 1814–1827 (2022).
Nikolić, S., Kovačević, G., Miličević, A. & Trinajstić, N. The Zagreb indices 30 years after. Croat. Chem. Acta 76, 113–124 (2003).
Das, K. C., Mondal, S. & Raza, Z. On Zagreb connection indices. Eur. Phys. J. Plus 137, 1242 (2022).
Javaid, M. & Sattar, A. On topological indices of zinc-based metal organic frameworks. Main Group Met. Chem. 45, 74–85 (2022).
Sattar, A. & Javaid, M. Topological aspects of metal–organic frameworks: Zinc silicate and oxide networks. Comput. Theor. Chem. 1222, 114056 (2023).
Sattar, A. & Javaid, M. Topological aspects of metal organic frameworks: Zinc silicate and oxide networks. Comput. Theor. Chem. 1222, 114056 (2023).
Rajpoot, A. & Selvaganesh, L. Potential application of novel AL-indices as molecular descriptors. J. Mol. Graph. Model. 118, 108353 (2023).
Randić, M. & Trinajstić, N. In search for graph invariants of chemical interes. J. Mol. Struct. 300, 551–571 (1993).
Mondal, S., Dey, A., De, N. & Pal, A. QSPR analysis of some novel neighbourhood degree-based topological descriptors. Complex Intell. Syst. 7, 977–996 (2021).
Randic, M., Guo, X., Oxley, T., Krishnapriyan, H. & Naylor, L. Wiener matrix invariants. J. Chem. Inf. Comput. Sci. 34, 361–367 (2002).
Calvin, W.R. Handbook of Chemistry and Physics. A Ready-Reference Book of Chemical and Physical Data. 66th Ed. (CRC Press, 1986).
Shigehalli, V. S. & Dsouza, A. M. Quantitative structure property relationship (QSPR) analysis of general Randić index. J. Algebr. Stat. 13, 1957–1967 (2022).
Ullah, A., Jamal, M. & Zaman, S. Shamsudin, connection based novel AL topological descriptors and structural property of the zinc oxide metal organic frameworks. Phys. Scr. 99, 055202 (2024).
Acknowledgements
The authors extend their appreciation to Taif University, Saudi Arabia, for supporting this work through project number (TU-DSPP-2024-94). The authors are grateful to anonymous referees for their valuable suggestions, which significantly improved this manuscript.
Funding
This research was funded by Taif University, Saudi Arabia, Project No. (TU-DSPP-2024-94).
Author information
Authors and Affiliations
Contributions
All the authors Xiaofang Li, Muzafar Jamal, Asad Ullah, Emad E. Mahmoud, Shahid Zaman and Melaku Berhe Belay have equally contributed to this manuscript in all stages, from conceptualization to the write-up of final draft.
Corresponding authors
Ethics declarations
Competing interests
The authors declare no competing interests.
Additional information
Publisher's note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.
About this article
Cite this article
Li, X., Jamal, M., Ullah, A. et al. Computational insights into zinc silicate MOF structures: topological modeling, structural characterization and chemical predictions. Sci Rep 14, 19866 (2024). https://doi.org/10.1038/s41598-024-70567-4
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/s41598-024-70567-4
Keywords
This article is cited by
-
Mathematical study of silicate and oxide networks through Revan topological descriptors for exploring molecular complexity and connectivity
Scientific Reports (2025)
-
Chemical applicability and predictive potential of certain graphical indices for determining structure-property relationships in polycrystalline acid magenta (C20H17N3Na2O9S3)
Scientific Reports (2025)
-
Computational insights into flavonoid molecular structures and their QSPR modeling via degree based molecular descriptors
Chemical Papers (2025)
-
On analysis of the neighborhood irregularity descriptors for melamine-based TriCF networks: a novel topological insight into structural complexity
Chemical Papers (2025)