Table 8 Significant MTAs and candidate genes identified as associated with stress-tolerance index (STI) of morphological traits based on GWAS of 90 safflower genotypes.
Trait | Marker | Chr | Pos | Gene ID/Species | Gene function |
|---|---|---|---|---|---|
DTF | Cart-SNP1971 | 4 | 73,419,486 | LOC105168621/Sesamum indicum | zinc finger CCCH domain-containing protein 14 |
DTM | Cart-SNP2139 | 4 | 86,230,386 | LOC112522803/Cynara cardunculus | probable carboxylesterase 18 |
Cart-SNP4843 | 8 | 87,570,875 | LOC112528143/Cynara cardunculus | mitotic spindle checkpoint protein BUBR1-like | |
Cart-SNP5982 | 10 | 83,586,269 | DQ986396.1/Carthamus lanatus | 12 RNA polymerase III (rpc2) gene | |
HD | Cart-SNP2107 | 4 | 84,293,657 | OR347002.1/ Carthamus tinctorius | diacylglycerol acyl transferase 1 gene |
NHP | Cart-SNP2113 | 4 | 84,403,713 | LOC112522661/Cynara cardunculus | biotin carboxylase 1 |
Cart-SNP3276 | 6 | 28,036,241 | OR346996.1/ Carthamus tinctorius | Pyruvate dehydrogenase gene | |
PH | Cart-SNP5778 | 10 | 66,942,797 | LOC111911912/Lactuca sativa | U-box domain-containing protein 2 |
Cart-SNP5943 | 10 | 81,633,084 | LOC111903871/Lactuca sativa | serine/threonine-protein kinase STY46 | |
TSW | Cart-SNP1665 | 4 | 1,119,177 | LOC111919333/ Lactuca sativa | uncharacterized protien coding |
SY | Car-SNP665 | 2 | 11,251,751 | LOC112527224/ Cynara cardunculus | Transcription initiation factor TFIID subunit 15 |
Cart-SNP3025 | 6 | 2,811,160 | LOC122581056/Carthamus tinctorius | 3-deoxy-D-manno-octulosonic acid transferase |
