Fig. 6

NPX values of the BCs for the proteins found significant by only one of the four methods after batch correction. (A) NPX values of the bridging controls for the protein found significant only after batch correction with BAMBOO. (B) NPX values of the bridging controls for the 3 proteins found significant only after batch correction with median centering normalization. (C) NPX values of the bridging controls for the 5 proteins found significant only after batch correction with ComBat.