Table 2 Significant SNPs for LMA in the single-breed GWAS.

From: A meta-analysis of genome-wide association studies revealed significant QTL and candidate genes for loin muscle area in three breeding pigs

Population1

SSC2

N3

M4

Position (Mb)5

Top SNP

SNP

P-value

PVE (%)

Duroc

16

2

0

64.69–64.69

16_64693456

9.53 × 10–7

7.26

18

106

0

5.38–5.46

18_5401201

6.11 × 10–8

4.52

Landrace

8

1

0

114.12

8_114124135

7.39 × 10–7

3.71

9

31

0

119.54–119.56

9_119562660

1.79 × 10–7

4.11

10

1

0

66.7

10_66703841

5.75 × 10–7

0.80

16

1

0

75.66

16_75669256

3.74 × 10–7

0.84

Yorkshire

2

2

0

145.085

2_145085357

2.68 × 10–8

1.00

3

1

0

40.95

3_40956637

5.19 × 10–7

0.79

16

229

39

31.99–33.50

16_33228254

4.45 × 10–9

1.11

  1. 1Duroc pig (Duroc), Landrace pig (Landrace), Yorkshire pig (Yorkshire).
  2. 2Sus scrofa chromosome (SSC).
  3. 3N: number of significant SNPs (P < 1.00 × 10–6).
  4. 4M: number of significant SNPs (P < 5.00 × 10–8).
  5. 5Position: range of significant SNP in Ensembl.
  6. 6Phenotypic variation explained (PVE).
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