Table 4 Candidate genes for LMA in the single-breed GWASs and meta-analysis.
SSC1 | Candidate genes | Position (Mb)2 | N3 | Consequence |
---|---|---|---|---|
8 | SGMS2 | 114.12 | 1 | intron_variant |
14 | ADAM12 | 135.34–135.37 | 2 | intron_variant |
16 | ARL15 | 33.11–33.55 | 155 | downstream_gene_variant intron_variant 3_prime_UTR_variant |
CDC20B | 34.32–34-34 | 2 | intron_variant | |
DAB2 | 24.68 | 1 | intron_variant | |
DHX29 | 34.42–34.47 | 15 | downstream_gene_variant intron_variant | |
EBF1 | 64.69–64.69 | 2 | intron_variant | |
FST | 32.81–32.82 | 4 | intron_variant downstream_gene_variant | |
GPX8 | 34.34 | 1 | downstream_gene_variant | |
HSPB3 | 33.72 | 1 | upstream_gene_variant | |
MTREX | 34.60–34.61 | 2 | intron_variant downstream_gene_variant | |
NDUFS4 | 32.87–32.99 | 86 | 3_prime_UTR_variant downstream_gene_variant intron_variant upstream_gene_variant | |
PLPP1 | 34.61–34.73 | 4 | intron_variant | |
SKIV2L2 | 34.60–34.61 | 2 | intron_variant downstream_gene_variant | |
SLC38A9 | 34.67–34.75 | 4 | intron_variant non_coding_transcript_variant | |
SNX18 | 33.83–33.84 | 2 | intron_variant | |
18 | GALNTL5 | 5.39–5.46 | 106 | intron_variant 5_prime_UTR_variant missense_variant splice_region_variant splice_polypyrimidine_tract_variant synonymous_variant synonymous_variant |