Table 2 The indices of genetic diversity within accessions within5 countries and 2 continents.

From: Genetic distances and genome wide population structure analysis of a grain amaranth (Amaranthus hypochondriacus) diversity panel using genotyping by sequencing

Populations

Africa

China

Germany

India

Rest of Europe

Russia

United States of America

Segregation sites

31,695

31,324

33,430

35,556

34,597

31,103

30,881

Heo

0.172

0.172

0.167

0.152

0.216

0.178

0.201

Hee

0.143

0.194

0.194

0.221

0.309

0.282

0.292

Nucleotide diversity (π)

0.183

0.205

0.200

0.224

0.309

0.286

0.294

Watterson Estimator (θ)

0.258

0.391

0.362

0.232

0.401

0.406

0.413

TajimaD

−0.075

−0.185

−0.162

−0.008

−0.092

−0.120

−0.119

FIS

0.056

0.198

0.178

0.313

0.341

0.412

0.333

  1. Heo, observed heterozygosity; Hee, expected heterozygosity; π, nucleotide diversity; θ, Watterson estimator; FIS, Inbreeding coefficient.
Back to article page