Table 1 Summary of genotyping-by-sequencing (GBS) data processing in five sheep populations.
From: Genomic architecture of purebred and crossbred Moghani lambs with Texel and Booroola sheep
Data processing | Population | ||||
|---|---|---|---|---|---|
Moghani | Booroola crossbred lambs | Texel crossbred lambs | |||
M (n = 9) | BMM (n = 13) | BRM (n = 19) | TDM (n = 11) | TTM (n = 13) | |
Average total raw reads | 3803688.22 | 3194395.08 | 3062537.26 | 3093784.82 | 3423425.71 |
Average mapped reads | 3791542.44 | 3181517.54 | 3056720.26 | 3085530.73 | 3412348.55 |
Average mapping quality | 47.308 | 47.503 | 47.733 | 47.516 | 47.670 |
Number of SNPs | 1437615 | 1606591 | 1953625 | 1489995 | 1534374 |
Number of indels | 133553 | 149687 | 181542 | 139662 | 142645 |
Number of multiallelic sites | 18323 | 23178 | 34278 | 19657 | 20555 |
Number of multiallelic SNP sites | 10808 | 13916 | 22225 | 11642 | 12417 |
