Table 2 Evaluation of method performance on the pirdisease v1.0 dataset.
Model | Rank index | AUC | AUPR |
---|---|---|---|
ETGPDA[*21 | 0.0927\(\:\pm\:\)0.0100 | 0.9309\(\:\pm\:\)0.0106 | 0.4494\(\:\pm\:\)0.1400 |
iPiDi-PUL(DT)[+19 | 0.3860\(\:\pm\:\)0.0576 | 0.6222\(\:\pm\:\)0.0596 | 0.0911\(\:\pm\:\)0.0155 |
iPiDi-PUL(SVM)[+19 | 0.2923\(\:\pm\:\)0.0104 | 0.7252\(\:\pm\:\)0.0113 | 0.1334\(\:\pm\:\)0.0057 |
iPiDi-PUL(RF)[+19 | 0.2641\(\:\pm\:\)0.0209 | 0.7585\(\:\pm\:\)0.0229 | 0.1826\(\:\pm\:\)0.0184 |
iPiDA-GCN*20 | 0.1012\(\:\pm\:\)0.0137 | 0.9219\(\:\pm\:\)0.0145 | 0.4277\(\:\pm\:\)0.0717 |
iPiDA-SWGCN*22 | 0.0949\(\:\pm\:\)0.0148 | 0.9285\(\:\pm\:\)0.0157 | 0.4510\(\:\pm\:\)0.0295 |
iPiDA-GBNN*25 | 0.2085\(\:\pm\:\)0.0762 | 0.8074\(\:\pm\:\)0.0818 | 0.3283\(\:\pm\:\)0.0711 |
piRDA*7 | 0.0903\(\:\pm\:\)0.0035 | 0.9334\(\:\pm\:\)0.0037 | 0.3587\(\:\pm\:\)0.0107 |
PUTransGCN*26 | 0.0743\(\:\pm\:\)0.0058 | 0.9500\(\:\pm\:\)0.0064 | 0.6794\(\:\pm\:\)0.0167 |
MambaCAttnGCN+* | 0.0716\(\:\pm\:\)0.0031 | 0.9530\(\:\pm\:\)0.0035 | 0.6848\(\:\pm\:\)0.0112 |