Table 2 List of strains used in the inclusivity and exclusivity for the validation assay of Xanthomonas axonopodis pv. vasculorum specific loop mediated isothermal amplification (LAMP) and endpoint PCR.
From: Genome guided LAMP assay for rapid and reliable detection of Xanthomonas axonopodis pv. vasculorum
Species | Strain ID | Host | Origin | Results | |
|---|---|---|---|---|---|
LAMP | PCR | ||||
Inclusivity panel | |||||
Xanthomonas axonopodis pv. vasculorum | LMG894 | Saccharum officinarum | Australia | Positive | Positive |
X. axonopodis pv. vasculorum | LMG897 | S. officinarum | Mauritius | Positive | Positive |
X. axonopodis pv. vasculorum | LMG901 | S. officinarum | Mauritius | Positive | Positive |
X. axonopodis pv. vasculorum | LMG903 | Thysanolaena maxima | Mauritius | Positive | Positive |
X. axonopodis pv. vasculorum | LMG8709 | Roystonea regia | Mauritius | Positive | Positive |
X. axonopodis pv. vasculorum | LMG8715 | S. officinarum | Reunion | Positive | Positive |
Exclusivity panel | |||||
Stenotrophomonas aracearum sp. nov. | A5588 | Anthurium sp. | Hawaii, USA | Negative | Negative |
S. oahuensis sp. nov. | A5586 | Anthurium sp. | Hawaii, USA | Negative | Negative |
Stenotrophomonas sp. | A1974 | Syngonium sp. | Hawaii, USA | Negative | Negative |
X. arboricola | A6244 | Epipremnum sp. | Hawaii, USA | Negative | Negative |
X. arboricola | A1964 | Anthurium sp. | Florida, USA | Negative | Negative |
X. arboricola | A2112 | Colocasia sp. | Hawaii, USA | Negative | Negative |
X. arboricola | A5600 | Colocasia sp. | Hawaii, USA | Negative | Negative |
X. campestris pv. campestris | A4724 | Dieffenbachia sp. | Hawaii, USA | Negative | Negative |
X. citri pv. aracearum | A6252 | Xanthosoma sp. | Florida, USA | Negative | Negative |
X. citri pv. aracearum | A6232 | Syngonium sp. | Hawaii, USA | Negative | Negative |
X. euvesicatoria | A1809 | Caladium sp. | Florida, USA | Negative | Negative |
X. euvesicatoria | A1986 | Dieffenbachia sp. | Florida, USA | Negative | Negative |
X. euvesicatoria | A1989 | Dieffenbachia sp. | Florida, USA | Negative | Negative |
X. euvesicatoria | A1962 | Philodendron sp. | Hawaii, USA | Negative | Negative |
X. euvesicatoria | A3651 | Polyscias guilfoylei | Hawaii, USA | Negative | Negative |
X. euvesicatoria | A3650 | P. guilfoylei | Hawaii, USA | Negative | Negative |
X. hawaiiensis sp. nov. | A2111 | Colocasia sp. | Hawaii, USA | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A6241 | Aglaonema sp. | Hawaii, USA | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A4718 | Anthurium sp. | India | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A4719 | Anthurium sp. | India | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A2650 | Anthurium sp. | Jamaica | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A5172 | Anthurium sp. | Mauritius | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A4723 | Anthurium sp. | Hawaii, USA | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A6245 | Anthurium sp. | Hawaii, USA | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A6249 | Anthurium sp. | Hawaii, USA | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A6256 | Anthurium sp. | Hawaii, USA | Negative | NT |
X. phaseoli pv. dieffenbachiae | A2681 | Aroid | Hawaii, USA | Negative | Negative |
X. phaseoli pv. dieffenbachiae | A2108 | Dieffenbachia sp. | Hawaii, USA | Negative | Negative |
X. sacchari | A5592 | Anthurium sp. | Hawaii, USA | Negative | Negative |
X. sacchari | A6251 | Spathiphyllum sp. | Hawaii, USA | Negative | Negative |
X. sontii | A6237 | Aglaonema sp. | Hawaii, USA | Negative | Negative |
X. euvesicatoria | A1978 | Philodendron sp. | Florida, USA | Negative | NT |
X. phaseoli pv. dieffenbachiae | A6305 | Anthurium sp. | Hawaii, USA | Negative | NT |
X. euvesicatoria | A3794 | Solanum lycopersicum | Taiwan | Negative | NT |
X. euvesicatoria | A1711 | S. lycopersicum | California, USA | Negative | NT |
X. euvesicatoria | A3481 | S. lycopersicum | Taiwan | Negative | NT |
X. euvesicatoria | A3614 | S. lycopersicum | South America | Negative | NT |
X. euvesicatoria | A1786 | Capsicum sp. | Hawaii, USA | Negative | NT |
X. vesicatoria | A3791 | S. lycopersicum | New Zealand | Negative | NT |
X. vesicatoria | A1717 | S. lycopersicum | California, USA | Negative | NT |
X. euvesicatoria | A4468 | S. lycopersicum | Taiwan | Negative | NT |
X. campestris pv. campestris | A1694 | S. lycopersicum | California, USA | Negative | NT |
X. euvesicatoria | A6260 | S. lycopersicum | Florida, USA | Negative | NT |
Pseudomonas fluorescens | A4583 | Anthurium sp. | Hawaii, USA | Negative | NT |
X. phaseoli pv. dieffenbachiae | A6234 | Anthurium sp. | Hawaii, USA | Negative | NT |
X. vesicatoria | A1696 | S. lycopersicum | California, USA | Negative | NT |
Pantoea agglomerans | DP150B | Zea mays | NE, USA | Negative | NT |
Curtobacterium flaccumfaciens pv. flaccumfaciens | DP122B | Z. mays | NE, USA | Negative | NT |
Pseudomonas syringae pv. syringae | A6178 | S. lycopersicum | Georgia, USA | Negative | NT |
Klebsiella sp. | A6223 | Z. mays | Iowa, USA | Negative | NT |
Microbacterium sp. | A6214 | Z. mays | Iowa, USA | Negative | NT |
Pantoea ananatis | DP149 | Z. mays | TX, USA | Negative | NT |
P. agglomerans | A6216 | Z. mays | TX, USA | Negative | NT |
P. ananatis | A6220 | Z. mays | Iowa, USA | Negative | NT |
P. syringae pv. syringae | A3830 | Oryza sativa | South Africa | Negative | NT |
Agrobacterium tumefaciens | A2961 | Prunus avium | New York, USA | Negative | NT |
Pseudomonas sp. | DP142 | Z. mays | IA, USA | Negative | NT |
Pectobacterium brasiliense | PL64 | Brassica oleraceae | Hawaii, USA | Negative | NT |
X. phaseoli pv. dieffenbachiae | PL36 | Anthurium sp. | Hawaii, USA | Negative | NT |
Erwinia amylovora | A1084 | Pyrus sp. | – | Negative | NT |
Clavibacter michiganensis | A1741 | S. lycopersicum | California, USA | Negative | NT |
Pectobacterium carotovorum | PL73 | Solanum tuberosum | Hawaii, USA | Negative | NT |
Ralstonia solanacearum | A5658 | S. lycopersicum | Ontario, Canada | Negative | NT |
Clavibacter sepedonicus | A2041 | S. tuberosum | Denmark | Negative | NT |
Rathayibacter tritici | LMG3726 | Triticum aesticum | Egypt | Negative | NT |
Dickeya dianthicola | PL24 | S. tuberosum | Hawaii, USA | Negative | NT |
D. solani | LMG25993 | S. tuberosum | Netherlands | Negative | NT |
D. zeae | PL47 | Brassica oleraceae var. sabellica | Hawaii, USA | Negative | NT |
D. fangzhongdai | PL149 | C. esculenta | Hawaii, USA | Negative | NT |
Klebsiella aerogene | A3131 | unknown | unknown | Negative | NT |
P. ananatis | 3 | Panicum maximum | Hawaii, USA | Negative | NT |
Pantoea stewartii | 13 A | Setaria verticillata | Hawaii, USA | Negative | NT |
X. phaseoli pv. dieffenbachiae | A5362 | Anthurium sp. | Hawaii, USA | Negative | NT |
P. brasiliense | PL246 | Brassica rapa subsp. chinensis | Hawaii, USA | Negative | NT |
D. dadantii | A1042 | Philodendron sp. | Hawaii, USA | Negative | NT |
X. phaseoli pv. dieffenbachiae | A5721 (XAD) | Anthurium sp. | Hawaii, USA | Negative | NT |
X. oryzae pv. oryzicola | A3545 | O. sativa | – | Negative | NT |
Ralstonia solanacearum | A5538 | Solanum nigrum | Nairobi, Kenya | Negative | NT |
Klebsiella sp. | A223 | Vanda sp. | – | Negative | NT |
X. oryzae pv. oryzicola | A3542 | O. sativa | – | Negative | NT |
Rathayibacter toxicus | WAC3373 | Phalaris paradoxa | Western Australia | Negative | NT |
Healthy host/soil | |||||
Healthy Rice | – | O. sativa | – | Negative | NT |
Healthy sugarcane leaf | – | Saccharum sp. | – | Negative | NT |
Soil | – | – | Negative | NT | |
