Table 7 Genes involved in the mechanism of MDR caused by DEC.

From: Integrating computational approaches to uncover β-lactamase-associated resistance in diarrheagenic Escherichia coli from pediatric patients

Gene

Protein/Enzyme Name

Pathway

Role

Reference

acrA

Multidrug efflux system protein AcrA

Efflux pump system

Component of AcrAB-TolC efflux pump, expels a wide range of antibiotics

42

acrB

Multidrug efflux system protein AcrB

Component of AcrAB-TolC efflux pump, expels a wide range of antibiotics

42

tolC

Outer membrane protein TolC

Outer membrane channel of AcrAB-TolC efflux pump

42

EmrE

Small multidrug resistance protein EmrE

Multidrug efflux pump

43

MdfA

Multidrug efflux pump MdfA

Multidrug efflux pump

43

NorE

Quinolone resistance protein NorE

Multidrug efflux pump

43

bla_TEM

Beta-lactamase TEM

Beta-lactamase production

Beta-lactamase enzyme, hydrolyzes beta-lactam antibiotics

44

bla_SHV

Beta-lactamase SHV

Beta-lactamase enzyme, hydrolyzes beta-lactam antibiotics

44

bla_CTX-M

Beta-lactamase CTX-M

Beta-lactamase enzyme, hydrolyzes beta-lactam antibiotics

44

aac(3)-II

Aminoglycoside 3’-phosphotransferase II

Aminoglycoside modification

Aminoglycoside acetyltransferase, modifies aminoglycosides

45

aac(6’)-Ib

Aminoglycoside 6’-N-acetyltransferase

Aminoglycoside acetyltransferase, modifies aminoglycosides

45

aadA

Aminoglycoside adenyltransferase A

Aminoglycoside adenyltransferase, modifies aminoglycosides

45

tetA

Tetracycline resistance protein TetA

Tetracycline resistance

Efflux pump for tetracycline

46

tetB

Tetracycline resistance protein TetB

Efflux pump for tetracycline

46

qnr

Quinolone resistance protein Qnr

Quinolone resistance

Protects DNA gyrase and topoisomerase IV from quinolones

47

gyrA

DNA gyrase subunit A

Target site mutation, reduces quinolone binding

48

parC

DNA topoisomerase IV subunit A

Target site mutation, reduces quinolone binding

49

sul1

Dihydropteroate synthase I

Sulfonamide resistance

Encodes an enzyme not inhibited by sulfonamides

50

sul2

Dihydropteroate synthase II

Encodes an enzyme not inhibited by sulfonamides

50

mphA

Macrolide 2’-phosphotransferase

Macrolide resistance

Macrolide phosphotransferase, inactivates macrolides

51

cat

Chloramphenicol acetyltransferase

Chloramphenicol resistance

Chloramphenicol acetyltransferase, inactivates chloramphenicol

52

intI1

Integrase 1

Integron-mediated gene capture

Integron integrase, captures and integrates resistance genes

53

csgD

Regulator of curli production

Biofilm formation

Regulator controlling curli and biofilm-associated genes

54

bcsA

Cellulose synthase catalytic subunit A

Catalytic subunit of cellulose synthase, contributes to biofilm matrix

55

pgaC

Poly-beta-1,6-N-acetyl-D-glucosamine synthase

Glycosyltransferase involved in PIA synthesis, part of biofilm matrix

56

fimH

Fimbrial adhesin

Type 1 fimbrial adhesin, important for initial attachment

57

luxS

Autoinducer 2 synthase

Synthesizes AI-2 for quorum sensing and biofilm regulation

58