Table 5 Mutant structures RMSD, TM-scores, ERRAT, QMEAN & VERIFY3D values.

From: Decoding pathogenic MMP9 variants in rheumatoid arthritis using computational and molecular dynamics approaches

Residual change

TM-Score

RMSD values

ERRAT

QMEAN

VERIFY3D

D390Y

1.00000

0.00

73.2843

0.85 ± 0.05

96.15%

Y262C

0.99412

0.72

75.2451

0.85 ± 0.05

95.43%

P180L

0.99412

0.72

73.7745

0.83 ± 0.05

95.43%

C329S

0.994

0.72

74.5098

0.85 ± 0.05

95.43%

M422R

0.99412

0.72

73.2843

0.84 ± 0.05

95.43%

G183E

0.99412

0.72

74.5098

0.84 ± 0.05

95.43%

R98L

1.00

0.00

73.7745

0.85 ± 0.05

96.15%

D434N

0.99412

0.72

74.5098

0.83 ± 0.05

95.43%

G306C

0.99412

0.72

74.5098

0.85 ± 0.05

95.43%

G438A

0.99412

0.72

74.5098

0.84 ± 0.05

95.43%

C347Y

0.99412

0.72

73.7745

0.84 ± 0.05

95.43%