Table 1 Comparison of average sequencing data performance across the 4 Peanut SNP panels.
SNP panel | Sample number | Clean base (bp) | Mapped ratio (%) | Uniformity 10 | Uniformity 20 | Uniformity 50 | On-target | Capture efficiency(%) | Sequencing depth (X) |
|---|---|---|---|---|---|---|---|---|---|
Arachis_hy01 | 48 | 13,396,397.04 | 0.82 | 0.96 | 0.88 | 0.60 | 0.29 | 25.00% | 100.00 |
Arachis_hy02 | 48 | 7,116,016.83 | 0.99 | 0.95 | 0.87 | 0.62 | 0.19 | 30.38% | 100.00 |
Arachis_hy03 | 48 | 5,706,620.79 | 0.99 | 0.94 | 0.87 | 0.63 | 0.48 | 57.78% | 100.00 |
PHR0301_Ah10K | 48 | 3,229,963.29 | 0.99 | 1.00 | 0.99 | 0.85 | 0.59 | 65.64% | 100.00 |
