Table 2 Prioritized candidate differentially expressed transcripts identified in Longissimus thoracis muscle of Nellore cattle divergent for meat tenderness.

From: Multi-omics integration identifies molecular markers and biological pathways for carcass and meat quality traits in Nellore cattle

ID*

Transcript

log2FC

SE

p-value

q-value

rna-XM_005212571.4_1

RTN4

-1.7345

0.5442

4.23E-05

0.0079

rna-NM_001024689.3_1

CSRP3

-1.464

0.4658

3.46E-05

0.0067

rna-NM_174290.2_1

CRYAB

-1.1592

0.3917

9.21E-05

0.0136

rna-XM_005221342.4_1

MAP2K6

-1.1192

0.3151

1.75E-05

0.004

rna-XM_005204429.4_1

NEXN

-1.0826

0.4519

5.45E-04

0.0422

rna-XM_024981823.1_1

DNAJA4

-1.0169

0.4213

4.28E-04

0.037

rna-XM_024982647.1_1

MYOM3

-0.9834

0.2081

1.41E-07

 < 0.0001

rna-NM_001034416.1_1

IMPDH2

-0.9024

0.2988

1.30E-04

0.0171

rna-NM_001014959.1_1

DNAJB5

-0.8604

0.2968

1.57E-04

0.0196

rna-NM_203322.3_1

HSPA1A

-0.7585

0.3107

5.14E-04

0.0412

rna-NM_001075148.1_1

HSPA5

-0.7112

0.2268

1.03E-04

0.0146

rna-NM_001193039.1_1

DNAJB9

-0.6801

0.2361

1.50E-04

0.019

rna-NM_001079637.1_1

HSP90AB1

-0.5739

0.2109

2.64E-04

0.0273

rna-NM_001114192.2_1

HSPA4

-0.5733

0.2321

5.65E-04

0.0431

rna-NM_001040521.2_1

IFT43

-0.5442

0.1885

1.82E-04

0.0211

rna-NM_001076907.1_1

RB1

-0.5097

0.1271

2.44E-06

0.0007

rna-XM_010802317.2_1

IGFBP5

0.681

0.2796

4.87E-04

0.0399

rna-XM_015462996.2_1

SEMA6C

1.0417

0.3145

1.81E-05

0.0041

rna-XM_005211821.4_1

MYEF2

1.8975

0.9056

4.99E-04

0.0404

rna-XM_015474623.2_1

FRZB

3.1243

2.0819

6.84E-04

0.0488

  1. ID: transcript identification; Transcript: gene symbol; log2FC: log2 fold change (relative expression); SE: standard error. The positive sign of the fold change estimates refers to the tender meat group.
  2. *For the full list of the 139 differentially expressed transcripts identified, see Supplementary Material: Table S9.
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