Table 4 Differentially expressed transcripts identified in Longissimus thoracis muscle of Nellore cattle divergent for marbling.

From: Multi-omics integration identifies molecular markers and biological pathways for carcass and meat quality traits in Nellore cattle

ID

Transcript

log2FC

SE

p-value

q-value

rna-XM_005204886.4_1

MAST2

-0.9438

0.4139

3.097E-04

0.0379

rna-XM_024996354.1_1

PAPPA

-0.7969

0.2739

9.003E-05

0.0126

rna-XM_010806712.3_1

NFIX

-0.6914

0.2577

3.250E-04

0.0394

rna-XM_005204732.4_1

STK40

-0.6378

0.1984

3.932E-05

0.0058

rna-NM_001191513.1_1

MAD2L1

-0.6082

0.1789

2.895E-05

0.0044

rna-NM_001103338.1_1

ACTR1B

-0.5196

0.1977

2.855E-04

0.0352

rna-NM_001098862.2_1

LZTS2

-0.5177

0.2045

4.074E-04

0.0477

rna-XM_005226675.4_1

PRSS23

0.6331

0.2499

2.866E-04

0.0353

rna_gene-LOC784938_1

LOC784938

0.6696

0.2464

1.858E-04

0.0240

rna-XM_024998852.1_1

UXS1

0.7010

0.1915

8.813E-06

0.0014

rna-XM_024986984.1_1

TNNT3

1.2860

0.4116

2.946E-05

0.0045

rna-XM_015473744.2_1

FAM207A

1.8300

0.6754

2.732E-04

0.0340

rna-XR_814213.2_1

KLC1

2.2797

0.2725

4.046E-04

0.0474

rna-XM_015471856.2_1

MRPL55

2.8558

0.0562

8.738E-05

0.0123

rna-XM_005217659.4_1

GLT1D1

3.0002

0.1162

7.602E-05

0.0109

rna-XM_024996758.1_1

TRPM2

3.3739

0.4989

2.183E-04

0.0277

rna-XM_005218229.4_1

SPECC1L

3.5168

0.7764

1.013E-05

0.0016

rna-XM_010808572.3_1

ENPP1

4.1372

0.8230

1.994E-05

0.0031

rna-XM_024986271.1_1

MYOM2

4.3302

0.1898

2.638E-05

0.0041

rna-XM_005223591.4_1

MOG

5.9177

0.0788

2.616E-05

0.0040

rna-XM_024989892.1_1

KIRREL1

7.1527

0.9366

2.253E-04

0.0284

  1. ID: transcript identification Transcript: gene symbol; log2FC: log2 fold change (relative expression); SE: standard error. The fold change estimates refer to the high marbling group.