Table 5 Differentially expressed transcripts identified in Longissimus thoracis muscle of Nellore cattle divergent for backfat thickness (BFT).

From: Multi-omics integration identifies molecular markers and biological pathways for carcass and meat quality traits in Nellore cattle

ID

Transcript

log2FC

SE

p-value

q-value

rna-XM_024984829.1_1

LAT

-2.5381

0.9189

5.18E-06

0.0009

rna-NM_001192074.1_1

SCN2B

-1.4705

0.4910

4.30E-05

0.0065

rna-XM_024976612.1_1

LOC112441807

-1.3147

0.4478

1.26E-05

0.0021

rna-XM_005204886.4_1

MAST2

-1.0899

0.3608

3.89E-05

0.0060

rna-XR_233322.4_1

LOC101906451

-0.9269

0.2399

2.21E-06

0.0004

rna-XM_024996354.1_1

PAPPA

-0.8959

0.2687

1.84E-05

0.0030

rna-XM_024983903.1_1

LOC788634

-0.8329

0.3469

3.09E-04

0.0382

rna-NM_001304328.1_1

OTOG

-0.7579

0.3049

3.22E-04

0.0394

rna-XM_024990821.1_1

SMO

-0.7293

0.2875

2.56E-04

0.0326

rna_gene-DEF8_1

DEF8

-0.7130

0.2247

4.49E-05

0.0068

rna-XM_010806712.3_1

NFIX

-0.6869

0.2435

1.45E-04

0.0194

rna-NM_001205932.1_1

ARHGEF37

-0.5889

0.1368

6.77E-07

0.0001

rna-XM_005212120.3_1

ELMSAN1

-0.5857

0.1426

1.02E-06

0.0002

rna-XM_005217008.4_1

RERE

-0.5833

0.2326

2.37E-04

0.0304

rna_gene-CASZ1_1

CASZ1

-0.5214

0.1843

1.50E-04

0.0200

rna-XM_024998852.1_1

UXS1

0.6775

0.2254

1.05E-04

0.0143

rna-XM_005226675.4_1

PRSS23

0.7166

0.2342

7.39E-05

0.0105

rna-XR_815563.3_1

LOC101908535

0.7169

0.2347

6.00E-05

0.0088

rna-NM_001035493.3_1

HSF2BP

0.7797

0.2813

1.76E-04

0.0232

rna-NM_001015603.1_1

STRADA

1.0149

0.3250

7.06E-05

0.0101

rna-NM_001205423.1_1

TP53INP1

1.3353

0.5523

1.51E-04

0.0201

rna-XM_002687401.6_1

FAM19A2

1.3489

0.4471

8.36E-05

0.0117

rna-gene-LOC112448874_1

LOC112448874

1.7195

0.5853

6.54E-05

0.0095

rna-XM_024991716.1_1

C5H12orf4

2.0142

0.6272

1.48E-05

0.0024

rna-XM_015473744.2_1

FAM207A

2.2929

0.7795

7.26E-05

0.0104

rna-NM_001034215.2_1

DIRAS3

3.4017

1.2274

3.61E-05

0.0056

rna-XM_024987378.1_1

INTS3

3.4639

1.4672

2.74E-06

0.0005

rna-XM_024994865.1_1

RFX1

3.9744

2.0297

1.92E-08

3.74E-06

rna-XR_003035385.1_1

SAP30L

4.0312

1.5011

6.09E-05

0.0089

rna-NM_001075867.1_1

APBB3

4.4777

1.6574

1.70E-07

3.15E-05

rna-XM_005223591.4_1

MOG

6.0383

2.1765

2.45E-05

0.0039

rna-XM_024987989.1_1

L1CAM

6.0949

1.8801

1.20E-09

2.84E-07

rna-XM_005208877.2_1

HNRNPM

6.1392

2.0415

5.87E-09

1.15E-06

rna-XM_024986271.1_1

MYOM2

7.3781

2.2776

1.10E-11

7.45E-09

rna-XM_024991324.1_1

PODXL

7.5089

2.6819

7.04E-05

0.0101

rna-XM_010808572.3_1

ENPP1

8.6715

1.7725

4.56E-11

2.15E-08

rna-XM_015460609.2_1

LZTS2

9.0225

3.8647

8.94E-05

0.0125

rna-XM_010804387.3_1

CAMK2B

9.1607

4.0171

7.27E-05

0.0104

rna-XM_024978741.1_1

MYBPC2

11.8260

3.9225

8.78E-13

1.19E-09

  1. ID: transcript identification; Transcript: gene symbol; log2FC: log2 fold change (relative expression); SE: standard error. The fold change estimates refer to the high BFT group.
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