Table 1 Performance of Eight Baseline Models on \(F_{max}\), \(S_{min}\) and AUPR Scores.

From: A multimodal model for protein function prediction

Method

AUPR

\(F_{max}\)

\(S_{min}\)

MF

BP

CC

MF

BP

CC

MF

BP

CC

TAWFN21

0.718

0.385

0.488

0.762

0.628

0.693

0.326

0.483

0.454

DeepGO22

0.391

0.189

0.258

0.576

0.500

0.589

0.475

0.578

0.553

DeepFRI23

0.495

0.265

0.274

0.627

0.546

0.617

0.432

0.543

0.530

HEAL24

0.661

0.339

0.435

0.733

0.613

0.673

0.357

0.499

0.475

BLAST8

0.136

0.067

0.096

0.326

0.336

0.443

0.643

0.662

0.632

ATGO25

0.708

0.249

0.306

0.76

0.318

0.703

0.336

0.600

0.539

DeepGOPlus26

0.422

0.199

0.266

0.595

0.555

0.611

0.453

0.566

0.621

GAT-GO27

0.660

0.381

0.479

0.633

0.492

0.547

0.437

0.521

0.466

MultiPreGO28

0.363

0.326

0.568

0.367

0.328

0.536

Nan

Nan

Nan

MMPFP

0.721

0.401

0.495

0.769

0.632

0.695

0.320

0.480

0.448