Table 1 Information on 11 candidate reference genes, primers, and amplification characteristics note: E, amplification efficiency; R2, regression coefficient.
From: Screening and validation of optimal real-time PCR reference genes for Abelmoschus Manihot
Gene symbol | Unigene annotation | Primer sequence (5′-3′) | Product (bp) | E (%) | R2 |
---|---|---|---|---|---|
ACT2 | Actin 2 | ACACTGTGCCAATCTATGAAG | 145 | 101.6 | 0.999 |
ACAATTTCCCGCTCAGCAGTG | |||||
PP2A1 | Protein phosphatase 2Â A | GACATCATGTCCATGTTTGATG | 149 | 98.8 | 0.997 |
TGTGAGAAATTAACAATGACAG | |||||
PP2A2 | Catalytic subunit of protein phosphatase 2Â A | ATCGGAGGCGGAGGTGAAGAC | 141 | 92.3 | 0.996 |
CGGAACAGTTCGACGAGATCATGG | |||||
YLS | Yellow leaf specific | CGACTGGGATGAGACTTGT | 234 | 98.4 | 0.993 |
CTGTTTGTCCTTGAGAGCC | |||||
PP2A3 | Protein phosphatase 2Â A regulatory subunit | TTGAAGATTACTCGGTTTAG | 116 | 101.3 | 0.999 |
ACGGGAGTGGATAAGGTA | |||||
EIF4α | Eukaryotic initiation factor 4 alpha | ATGCATATGGTTTTGAGAAGCC | 115 | 92.4 | 0.993 |
AAAGTTGCAGTCTTCCCAGTTC | |||||
TUA | Tubulin α | GGTGGTGGAACTGGCTCTG | 217 | 95.0 | 0.989 |
GGCAAATGTCATAGATGGCTT | |||||
eIF | Eukaryotic translation initiation factor | GGTCCATCCTCATACATC | 102 | 92.9 | 0.983 |
GCTATCACTTCACTCCCAC | |||||
vps | Vacuolar protein sorting-associated protein | GAGGTGATGGGTGATGC | 134 | 95.5 | 0.984 |
CCTGAGGGAGCGTTTACT | |||||
PHD | PHD finger protein | GGCGTCAGGATTCCACAG | 123 | 98.2 | 0.992 |
AAGCTGCAAGGTAATGTTCG | |||||
GTP | GTP-binding protein | GTTCAACACCAGCCAACT | 92 | 101.3 | 0.998 |
ATCTGATGACCACCCAAG |