Table 2 Number and ratio of homozygous SNPs.
From: Establishment and genetic characterization of zebrafish RW line
|  | Protein-coding regions | 2-bp Splice junctions in introns | 5’-UTR | 3’-UTR | Other intronic regions | Intergenic regions | Total |
|---|---|---|---|---|---|---|---|
GRCz11.109 % (Nucleotides) | 5.556 (74,733,858) | 0.089 (1,191,760) | 0.433 (5,833,706) | 1.695 (22,796,785) | 65.838 (885,588,144) | 26.389 (354,957,578) | 100 (1,345,101,833) |
AB (n = 3) % (SNPs) | 2.222 ± 0.013 (147,469) | 0.005 ± 0.000 (303) | 0.370 ± 0.003 (24,525) | 1.419 ± 0.030 (94,196) | 72.345 ± 0.446 (4,800,871) | 23.639 ± 0.481 (1,566,713) | 100 (6,634,078) |
TU (n = 3) % (SNPs) | 2.012 ± 0.047 (77,396) | 0.005 ± 0.000 (184) | 0.342 ± 0.011 (13,170) | 1.358 ± 0.051 (52,234) | 72.919 ± 0.358 (2,806,852) | 23.365 ± 0.343 (899,646) | 100 (3,849,482) |
TL (n = 3) % (SNPs) | 2.263 ± 0.019 (243,606) | 0.005 ± 0.000 (487) | 0.372 ± 0.005 (40,095) | 1.429 ± 0.015 (153,878) | 72.361 ± 0.139 (7,788,117) | 23.570 ± 0.161 (2,536,712) | 100 (10,762,895) |
WIK (n = 3) % (SNPs) | 2.274 ± 0.008 (250,867) | 0.004 ± 0.000 (472) | 0.377 ± 0.006 (41,574) | 1.428 ± 0.021 (157,602) | 72.581 ± 0.205 (8,006,722) | 23.335 ± 0.181 (2,574,534) | 100 (11,031,771) |
SAT (n = 3) % (SNPs) | 2.134 ± 0.021 (204,332) | 0.004 ± 0.000 (423) | 0.356 ± 0.002 (34,061) | 1.395 ± 0.033 (133,553) | 72.687 ± 0.325 (6,962,131) | 23.424 ± 0.286 (2,243,032) | 100 (9,577,531) |
NHGRI-1 (n = 3) % (SNPs) | 2.269 ± 0.074 (159,465) | 0.005 ± 0.000 (330) | 0.382 ± 0.013 (26,870) | 1.444 ± 0.024 (101,516) | 71.805 ± 0.185 (5,051,034) | 24.095 ± 0.250 (1,695,781) | 100 (7,034,996) |
PET (n = 3) % (SNPs) | 2.162 ± 0.043 (209,466) | 0.005 ± 0.000 (451) | 0.354 ± 0.007 (34,409) | 1.376 ± 0.014 (133,505) | 72.183 ± 0.185 (7,011,297) | 23.920 ± 0.149 (2,322,671) | 100 (9,711,799) |
RW (n = 3) % (SNPs) | 2.180 ± 0.036 (251,074) | 0.004 ± 0.000 (506) | 0.358 ± 0.005 (41,214) | 1.397 ± 0.017 (160,943) | 72.187 ± 0.117 (8,316,050) | 23.874 ± 0.175 (2,750,613) | 100 (11,520,400) |
*AB (n = 3) % (SNPs) | 1.737 ± 0.007 (219,190) | 0.004 ± 0.000 (477) | 0.264 ± 0.001 (33,365) | 1.125 ± 0.006 (141,900) | 56.179 ± 0.065 (7,089,913) | 40.691 ± 0.071 (5,135,388) | 100 (12,620,234) |
IND (n = 3) % (SNPs) | 1.690 ± 0.013 (292,581) | 0.004 ± 0.000 (648) | 0.254 ± 0.002 (44,007) | 1.103 ± 0.006 (190,859) | 56.362 ± 0.073 (9,756,152) | 40.586 ± 0.079 (7,025,722) | 100 (17,309,968) |
M-AB (n = 3) % (SNPs) | 1.724 ± 0.007 (244,731) | 0.004 ± 0.000 (538) | 0.260 ± 0.001 (77,807) | 1.122 ± 0.004 (159,280) | 56.418 ± 0.010 (8,010,373) | 40.473 ± 0.012 (5,746,573) | 100 (14,239,303) |
IM (n = 3) % (SNPs) | 1.760 ± 0.009 (330,730) | 0.004 ± 0.000 (703) | 0.264 ± 0.001 (49,533) | 1.122 ± 0.003 (210,713) | 56.277 ± 0.016 (10,571,984) | 40.573 ± 0.021 (7,622,058) | 100 (18,785,741) |
