Table 2 Gene-specific nucleotide substitution model (NSM), molecular clock, mean nucleotide substitution rate (NSR), NSR (95% HPD) and tMRCA
From: Rapid evolution leads to extensive genetic diversification of cattle flu Influenza D virus
Gene | NSM | Clock | Mean NSR (sub/site/year) ×10−3 | NSR (95% HPD Interval) ×10−3 | tMRCA |
---|---|---|---|---|---|
PB2 | TIM + F + G4 | aUCLN | 1.35 | (1.122, 1.5935) | 1997.47 |
PB1 | TIM + F + G4 | STRICT | 1.16 | (0.99688, 1.3341) | 1997.04 |
P3 | TIM + F + I + G4 | STRICT | 1.31 | (1.1203, 1.4832) | 1997.53 |
HEF | TVM + F + G4 | aUCLN | 1.66 | (1.4047, 2.0118) | 1996.09 |
NP | TN + F + G4 | STRICT | 1.47 | (1.2389, 1.6881) | 1998.97 |
P42 | GTR + F + G4 | STRICT | 1.35 | (1.106, 1.6039) | 1997.30 |
NS | HKY + F + G4 | bUCED | 1.31 | (0.90492, 1.7197) | 1997.36 |
NS1 | HKY + F + G4 | aUCLN | 1.32 | (0.9572, 1.7028) | 1998.62 |
NS2 | TN93 + F + G4 | aUCLN | 1.63 | (1.0584, 2.2291) | 2003.16 |