Fig. 1: LMD Workflow. | Communications Biology

Fig. 1: LMD Workflow.

From: Cluster-independent multiscale marker identification in single-cell RNA-seq data using localized marker detector (LMD)

Fig. 1

A Schematic illustration of the workflow of LMD (B) Construction of the cell kNN (k = 5) graph. C Gene diffusion patterns (color-coded by density, computed as the initial or diffused state in each cell) for a localized gene Igll1 (red) and a non-localized gene Tnks1bp1 (cyan) overlaid on the t-SNE cell embedding at different time scales. D Normalized KL-divergence pattern of Igll1 and Tnks1bp1 during the diffusion process, with normalized KL-divergence against the time scale. Time scales in (C) are highlighted in red along the x-axis text labels in (D).

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