Table 1 Comparison of enrichment analysis of different algorithms in cancer data sets
From: Causal network inference based on cross-validation predictability
METHOD | CVP | CoMDP | Dendrix | e-Driver | ExInAtor | MDPFinder | MEMo | OncoDriveCLUST | SCS | |
|---|---|---|---|---|---|---|---|---|---|---|
CGC | GBM | 1.52 × 10-8 | 1 | 3.92 × 10-3 | 1.90 × 10-4 | 4.26 × 10-4 | 1.38 × 10-5 | 8.64 × 10-6 | 2.38 × 10-3 | 1 |
CESC | 5.16 × 10-7 | 1 | 7.19 × 10-2 | 7.64 × 10-3 | 8.22 × 10-4 | 4.06 × 10-2 | 1 | 8.64 × 10-6 | 3.01 × 10-1 | |
PRAD | 9.18 × 10-8 | 1 | 4.06 × 10-2 | 4.78 × 10-4 | 9.14 × 10-6 | 2.04 × 10-2 | 1 | 1.38 × 10-5 | 9.56 × 10-2 | |
LUSC | 2.37 × 10-9 | 5.08 × 10-1 | 3.66 × 10-2 | 3.66 × 10-2 | 2.13 × 10-8 | 3.66 × 10-2 | 1 | 1 | 3.01 × 10-1 | |
OV | 5.16 × 10-7 | 4.95 × 10-2 | 1.31 × 10-2 | 3.66 × 10-2 | 5.42 × 10-2 | 1.33 × 10-5 | 1 | 1 | 1 | |
SARC | 2.42 × 10-4 | 4.29 × 10-1 | 1.06 × 10-1 | 3.37 × 10-1 | 1.73 × 10-2 | 2.00 × 10-1 | 1 | 3.50 × 10-2 | 6.74 × 10-1 | |
KIRP | 9.14 × 10-4 | 1 | 1 | 1.52 | 5.13 × 10-3 | 9.10 × 10-2 | 1 | 1 | 6.74 × 10-1 | |
LIHC | 2.42 × 10-4 | 1 | 1.34 × 10-3 | 2.58 × 10-1 | 9.95 × 10-11 | 1.82 × 10-2 | 1 | 1.03 × 10-1 | 1 | |
InToGen | GBM | 4.63 × 10-10 | 1 | 2.43 × 10-3 | 9.26 × 10-5 | 1.10 × 10-5 | 1.43 × 10-7 | 3.31 × 10-6 | 4.32 × 10-5 | 1 |
CESC | 1.65 × 10-7 | 1 | 5.67 × 10-2 | 4.77 × 10-3 | 2.23 × 10-7 | 2.60 × 10-2 | 1 | 3.31 × 10-6 | 1.02 × 10-2 | |
PRAD | 3.52 × 10-9 | 1 | 2.60 × 10-2 | 2.25 × 10-7 | 9.95 × 10-9 | 9.08 × 10-3 | 1 | 9.34 × 10-4 | 2.13 × 10-1 | |
LUSC | 1.00 × 10-17 | 4.26 × 10-1 | 2.88 × 10-2 | 2.88 × 10-2 | 4.12 × 10-7 | 2.88 × 10-2 | 1 | 1 | 5.41 × 10-2 | |
OV | 4.63 × 10-10 | 3.19 × 10-2 | 6.79 × 10-3 | 2.88 × 10-2 | 5.16 × 10-2 | 9.52 × 10-5 | 1 | 1 | 1 | |
SARC | 5.68 × 10-4 | 3.55 × 10-1 | 8.38 × 10-2 | 3.28 × 10-3 | 1.92 × 10-4 | 1.61 × 10-1 | 1 | 2.27 × 10-3 | 1 | |
KIRP | 2.94 × 10-5 | 1 | 1 | 1.61 × 10-4 | 3.28 × 10-3 | 5.38 × 10-4 | 1 | 1.57 × 10-2 | 2.13 × 10-1 | |
LIHC | 1.39 × 10-4 | 1 | 8.25 × 10-4 | 1.19 × 10-3 | 8.71 × 10-16 | 4.43 × 10-4 | 1 | 7.17 × 10-4 | 2.13 × 10-1 | |
