Fig. 4: Comparison of nucSeq and single-cell data.
From: HypoMap—a unified single-cell gene expression atlas of the murine hypothalamus
a, UMAP visualization of the nucSeq data colored and annotated by cluster level 3 (C25) on all HypoMap cells (gray), demonstrating that the nucSeq data are evenly integrated in HypoMap. b, Heatmap of per-gene correlation (Pearson’s r) between sc-seq and nucSeq. Each row shows the density (color) of all genes in a specific gene class (number of genes shown on the right). Also see Supplementary Table 9. c, Heatmap of cluster-level correlation shown on the hierarchical tree of neuron clusters. For each cluster, the marker genes (M, number depicted in inner heatmap in red) were used to calculate Pearson’s r between all sc-seq and nucSeq data (middle heatmap in blue–green) or between individual HypoMap datasets and nucSeq (outer heatmap in blue–red). If there were fewer than ten cells per cluster and dataset, the comparison was omitted (white).
