Extended Data Fig. 1: Mutational inactivation of GAPDH oxidation sensitivity. | Nature Metabolism

Extended Data Fig. 1: Mutational inactivation of GAPDH oxidation sensitivity.

From: The GAPDH redox switch safeguards reductive capacity and enables survival of stressed tumour cells

Extended Data Fig. 1

(a) Previously suggested proton relay mechanism facilitating GAPDH oxidation by H2O2. Cys-152 (C152) is the active site cysteine. The hydroxyl group of Tyr-314 (Y314) is required for the protonation of the hydroxide leaving group. The hydroxyl group of Thr-177 (T177) is thought to support the proper positioning of the Tyr-314 hydroxyl group. See Peralta et al., 2015, for further details. Dotted lines: hydrogen bonds. (b) Representative LC-MS/MS spectra of the GAPDH tryptic peptide containing the active site cysteine, before (lower panel) and after (upper panel) cellular H2O2 exposure, demonstrating selective S-glutathionylation of the active site cysteine under oxidative stress conditions. The calculated mass for fragment y112+ of the glutathionylated peptide is 782.8 Da, the calculated mass of the corresponding alkylated fragment y112+ is 701.8 Da. (c) Glutathionylation of GAPDH Cys-152 in WT and mutant cells, before and after treatment of intact cells with 50 µM H2O2 for 5 min, as determined by LC-MS/MS analysis. Same experiment as shown in main Fig. 1b, but including a second independently selected clone of the mutant cell line (Y314F_2). Bars represent the mean of 3 technical replicates. Representative of n = 3 biological replicates. (d) Hyperoxidation (sulfinylation and/or sulfonylation) of GAPDH Cys-152 as visualized by immunoblotting before and after treatment of intact cells with up to 2 mM H2O2 for 5 min. Same experiment as shown in main Fig. 1c, but including additional H2O2 concentrations and a second independently selected clone of the mutant cell line (Y314F_2). Representative of n = 3 biological replicates. (e) Outline of the strategy to determine relative flux of [1,2-13C]glucose into glycolysis and the pentose phosphate pathway (PPP), respectively. The ratio of singly and doubly labeled fructose-6-phosphate is taken to indicate relative PPP flux. (f) Extracellular acidification rate (ECAR) of cells expressing either WT or mutant GAPDH in response to 10 mM glucose (black arrow) and 100 µM H2O2 (red arrow). Based on n = 6 biological replicates. Dotted lines: SD.

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