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Showing 101–150 of 194 results

Advanced filters: Author: Daniel Machado Clear advanced filters

Measuring the α-particle charge radius with muonic helium-4 ions

The 2S–2P transitions in muonic helium-4 ions are measured using laser spectroscopy and used to obtain an α-particle charge-radius value five times more precise than that from electron scattering.

Julian J. Krauth
Karsten Schuhmann
Franz Kottmann
ResearchOpen Access27 Jan 2021
Nature

Volume: 589, P: 527-531
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community

Using kefir as a natural model microbial ecosystem, the authors apply metabolomics, transcriptomics and large-scale mapping of inter-species interactions to study the drivers of stable coexistence of species in space and time.

Sonja Blasche
Yongkyu Kim
Kiran Raosaheb Patil
Research04 Jan 2021
Nature Microbiology

Volume: 6, P: 196-208
Evolution of genes and genomes on the Drosophila phylogeny

An international consortium reports the genomic sequence for ten Drosophila species, and compares them to two other previously published Drosophila species. These data are invaluable for drawing evolutionary conclusions across an entire phylogeny of species at once.

Andrew G. Clark
Michael B. Eisen
Iain MacCallum
Research08 Nov 2007
Nature

Volume: 450, P: 203-218
Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Matthew H. Bailey
William U. Meyerson
Christian von Mering
Amendments and CorrectionsOpen Access30 Nov 2020
Nature Communications

Volume: 11, P: 1
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Genome assemblies of 13 domesticated and wild rice relatives reveal salient features of genome evolution across the genus Oryza, especially rapid species diversification and turnover of transposons. This study also releases a complete long-read assembly of IR 8 ‘Miracle Rice’.

Joshua C. Stein
Yeisoo Yu
Rod A. Wing
ResearchOpen Access22 Jan 2018
Nature Genetics

Volume: 50, P: 285-296
Acute effect of high-definition and conventional tDCS on exercise performance and psychophysiological responses in endurance athletes: a randomized controlled trial

Daniel Gomes da Silva Machado
Marom Bikson
Alexandre Hideki Okano
ResearchOpen Access06 Jul 2021
Scientific Reports

Volume: 11, P: 1-15
Graft-derived neurons and bystander effects are maintained for six months after human iPSC-derived NESC transplantation in mice’s cerebella

Liliana S. Mendonça
Daniel Henriques
Luís Pereira de Almeida
ResearchOpen Access08 Feb 2024
Scientific Reports

Volume: 14, P: 1-20
Clinical determination of anatomical diameter in different dental groups correlating them with gender, age, tooth/canal and pulpoperiradicular diagnosis: an observational clinical study

Ricardo Machado
Gabriel Filipe Pamplona
Ulisses Xavier da Silva Neto
ResearchOpen Access27 Sept 2023
Scientific Reports

Volume: 13, P: 1-9
Functional composition of the Amazonian tree flora and forests

Using 13 functional traits we characterize the Amazonian trees and the communities they form. Amazonian tree communities are distributed along a fast-slow-spectrum. This results in clear differences in traits among these forests, as well as their biomass and biomass productivity.

Hans ter Steege
Lourens Poorter
Georgia Pickavance
ResearchOpen Access03 Mar 2025
Communications Biology

Volume: 8, P: 1-17
Potential therapeutic applications of autophagy

The process of autophagy has recently sparked great interest as it is recognized to be involved in a wide range of diseases. The prospect of its manipulation for therapeutic purposes has led to the discovery of many exciting new potential drug targets.

David C. Rubinsztein
Jason E. Gestwicki
Daniel J. Klionsky
Reviews01 Apr 2007
Nature Reviews Drug Discovery

Volume: 6, P: 304-312
Bone marrow morphologic features, MyPRS, and gene mutation correlations in plasma cell myeloma

Yansheng Hao
Daniel Khaykin
Julie Teruya-Feldstein
Research02 Aug 2019
Modern Pathology

Volume: 33, P: 188-195
Redefining respiratory sinus arrhythmia as respiratory heart rate variability: an international Expert Recommendation for terminological clarity

The physiological phenomenon whereby heart rate varies in phase with breathing in vertebrates has been known as ‘respiratory sinus arrhythmia’. In this Expert Recommendation, the authors argue that this terminology is potentially misleading and propose replacing it with the term ‘respiratory heart rate variability’, which avoids pathological connotations.

Clément Menuet
Alona Ben-Tal
Alexander V. Gourine
Reviews06 May 2025
Nature Reviews Cardiology

P: 1-7
Integrative transcriptomic analysis of the amyotrophic lateral sclerosis spinal cord implicates glial activation and suggests new risk genes

Humphrey et al. analyzed genetic and gene expression data from the postmortem spinal cords of patients with amyotrophic lateral sclerosis (ALS), observing changes in cell type composition and highlighting new risk genes.

Jack Humphrey
Sanan Venkatesh
Towfique Raj
Research08 Dec 2022
Nature Neuroscience

Volume: 26, P: 150-162
Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil

Here, the authors present results of the ZiBRA-2 project (https://www.zibra2project.org) which is an arbovirus surveillance project, across the Midwest of Brazil using a mobile genomics laboratory, combined with a genomic surveillance training program that targeted post-graduate students, laboratory technicians, and health practitioners in universities and laboratories.

Talita Émile Ribeiro Adelino
Marta Giovanetti
Luiz Carlos Junior Alcantara
ResearchOpen Access16 Apr 2021
Nature Communications

Volume: 12, P: 1-12
High proportion of cactus species threatened with extinction

Predictions suggest that a high proportion of plant species will be threatened with extinction in the near future. A global assessment of the threat status of cacti suggests that these iconic plants are amongst the most threatened taxonomic groups, with 31% of the 1,478 evaluated species at risk of extinction.

Bárbara Goettsch
Craig Hilton-Taylor
Kevin J. Gaston
Research05 Oct 2015
Nature Plants

Volume: 1, P: 1-7
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

Winston Patrick Kuo
Fang Liu
Tor-Kristian Jenssen
Research02 Jul 2006
Nature Biotechnology

Volume: 24, P: 832-840
Global Roadkill Data: a dataset on terrestrial vertebrate mortality caused by collision with vehicles

Clara Grilo
Tomé Neves
Eric Guinard
ResearchOpen Access31 Mar 2025
Scientific Data

Volume: 12, P: 1-14
Robotic fluidic coupling and interrogation of multiple vascularized organ chips

A system employing liquid-handling robotics and an integrated mobile microscope enables the automated culture, sample collection and in situ microscopy imaging of up to ten fluidically coupled organ chips within a standard tissue-culture incubator.

Richard Novak
Miles Ingram
Donald E. Ingber
Research27 Jan 2020
Nature Biomedical Engineering

Volume: 4, P: 407-420
PhyloQuant approach provides insights into Trypanosoma cruzi evolution using a systems-wide mass spectrometry-based quantitative protein profile

Simon Ngao Mule et al. introduce the “PhyloQuant” approach to infer evolutionary relationships of organisms, focusing on the genetically diverse Trypanosoma cruzi strains based on protein expression profiles derived from mass spectrometry. The authors show that phylogenies constructed from their PhyloQuant method and traditional molecular phylogenies are significantly correlated, and demonstrate species-specific proteins and their differential expression over evolutionary time.

Simon Ngao Mule
André Guilherme Costa-Martins
Giuseppe Palmisano
ResearchOpen Access11 Mar 2021
Communications Biology

Volume: 4, P: 1-12
Oral microflora and pregnancy: a systematic review and meta-analysis

Hoonji Jang
Alexa Patoine
Jin Xiao
ResearchOpen Access19 Aug 2021
Scientific Reports

Volume: 11, P: 1-31
Overlooking vegetation loss outside forests imperils the Brazilian Cerrado and other non-forest biomes

Polyanna da Conceição Bispo
Michelle C. A. Picoli
Celso H. L. Silva-Junior
Correspondence06 Nov 2023
Nature Ecology & Evolution

Volume: 8, P: 12-13
Publisher Correction: Measuring the α-particle charge radius with muonic helium-4 ions

Julian J. Krauth
Karsten Schuhmann
Franz Kottmann
Amendments and CorrectionsOpen Access27 Feb 2021
Nature

Volume: 591, P: E18
Omnivory in birds is a macroevolutionary sink

Diet is known to influence speciation, but much less is known about how this process operates at macroevolutionary scales. Using a global dietary database of birds, Burin et al. show that omnivory is associated with higher extinction and lower speciation rates compared to other guilds.

Gustavo Burin
W. Daniel Kissling
Tiago B. Quental
ResearchOpen Access07 Apr 2016
Nature Communications

Volume: 7, P: 1-10
At-admission prediction of mortality and pulmonary embolism in an international cohort of hospitalised patients with COVID-19 using statistical and machine learning methods

Munib Mesinovic
Xin Ci Wong
David Zucman
ResearchOpen Access16 Jul 2024
Scientific Reports

Volume: 14, P: 1-43
Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Joshua C. Stein
Yeisoo Yu
Rod A. Wing
Amendments and Corrections05 Oct 2018
Nature Genetics

Volume: 50, P: 1618
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

Christian Lieven
Moritz E. Beber
Cheng Zhang
Amendments and CorrectionsOpen Access19 Mar 2020
Nature Biotechnology

Volume: 38, P: 504
Concomitant dual-site tDCS and dark chocolate improve cognitive and endurance performance following cognitive effort under hypoxia: a randomized controlled trial

Parisa Banaei
Vahid Tadibi
Daniel Gomes da Silva Machado
ResearchOpen Access30 Sept 2023
Scientific Reports

Volume: 13, P: 1-15
Publisher Correction: Whole-genome sequencing of a sporadic primary immunodeficiency cohort

James E. D. Thaventhiran
Hana Lango Allen
Kenneth G. C. Smith
Amendments and Corrections17 Jul 2020
Nature

Volume: 584, P: E2
Heat shock transcription factor 1 as a therapeutic target in neurodegenerative diseases

Neurodegenerative disorders such as Alzheimer's disease and Parkinson's disease are associated with the accumulation of misfolded proteins, resulting in neuronal dysfunction and cell death. Thiele and colleagues discuss the therapeutic potential of combating protein misfolding by harnessing the natural cellular protein-folding machinery through pharmacological activation of heat shock transcription factor 1, the master regulator of chaperone protein expression.

Daniel W. Neef
Alex M. Jaeger
Dennis J. Thiele
Reviews01 Dec 2011
Nature Reviews Drug Discovery

Volume: 10, P: 930-944
A new dawn beyond lysine ubiquitination

Emerging evidence shows that ubiquitination can occur on nonlysine residues and nonproteinaceous substrates. This perspective summarizes the recent discoveries in noncanonical ubiquitination and advocates the development of chemical biology tools for new substrate identification and mechanistic dissection.

Daniel R. Squair
Satpal Virdee
Reviews27 Jul 2022
Nature Chemical Biology

Volume: 18, P: 802-811
Author Correction: Sampling the host response to SARS-CoV-2 in hospitals under siege

Alexander W. Charney
Nicole W. Simons
Miriam Merad
Amendments and Corrections05 Feb 2021
Nature Medicine

Volume: 27, P: 560
A promptable CT foundation model for solid tumor evaluation

Léo Machado
Léo Alberge
Paul Hérent
ResearchOpen Access25 Apr 2025
npj Precision Oncology

Volume: 9, P: 1-8
The biogeography of the Amazonian tree flora

Tree species turnover across Amazonian forests unveils sharp floristic transitional zones, that are linked with changes in soil fertility and climate.

Bruno Garcia Luize
Hanna Tuomisto
Hans ter Steege
ResearchOpen Access02 Oct 2024
Communications Biology

Volume: 7, P: 1-15
Increased activation of the WNT pathway in brain tissue from patients with cortical dysplasia type IIb

Fabio Jean Varella
Fernando Antônio Costa Xavier
Daniel Rodrigo Marinowic
ResearchOpen Access07 Mar 2025
Scientific Reports

Volume: 15, P: 1-10
Author Correction: Sampling the host response to SARS-CoV-2 in hospitals under siege

Alexander W. Charney
Nicole W. Simons
Miriam Merad
Amendments and Corrections21 Aug 2020
Nature Medicine

Volume: 26, P: 1493
CloudReg: automatic terabyte-scale cross-modal brain volume registration

Vikram Chandrashekhar
Daniel J. Tward
Joshua T. Vogelstein
Correspondence12 Jul 2021
Nature Methods

Volume: 18, P: 845-846
A comparative study on the effectiveness of pollutants control measures adopted in the steel industry to reduce workplace and environmental exposure: a case study

Daniel Onut Badea
Alina Trifu
Doru Costin Darabont
ResearchOpen Access30 Apr 2024
Scientific Reports

Volume: 14, P: 1-11
Sampling the host response to SARS-CoV-2 in hospitals under siege

Alexander W. Charney
Nicole W. Simons
Miriam Merad
Correspondence27 Jul 2020
Nature Medicine

Volume: 26, P: 1157-1158
Self supervised artificial intelligence predicts poor outcome from primary cutaneous squamous cell carcinoma at diagnosis

Nicolas Coudray
Michelle C. Juarez
John A. Carucci
ResearchOpen Access15 Feb 2025
npj Digital Medicine

Volume: 8, P: 1-14
Mapping density, diversity and species-richness of the Amazon tree flora

A study mapping the tree species richness in Amazonian forests shows that soil type exerts a strong effect on species richness, probably caused by the areas of these forest types. Cumulative water deficit, tree density and temperature seasonality affect species richness at a regional scale.

Hans ter Steege
Nigel C. A. Pitman
Karina Melgaço
ResearchOpen Access08 Nov 2023
Communications Biology

Volume: 6, P: 1-14
Amazon boundary layer aerosol concentration sustained by vertical transport during rainfall

Rapid vertical transport of small aerosol particles from the free troposphere to the atmospheric boundary layer occurs during precipitation and maintains the population of aerosol particles over Amazonia.

Jian Wang
Radovan Krejci
Scot T. Martin
Research24 Oct 2016
Nature

Volume: 539, P: 416-419
Ecological modelling approaches for predicting emergent properties in microbial communities

As extremely large microbial community datasets have proliferated, numerous approaches to studying their ecological properties have emerged. In this Review, the authors offer a guide to five ecological modelling techniques used to study complex microbial communities.

Naomi Iris van den Berg
Daniel Machado
Kiran R. Patil
Reviews16 May 2022
Nature Ecology & Evolution

Volume: 6, P: 855-865
A functional digital model of the Dingo thermal neutron imaging beamline

Klaudiusz Jakubowski
Joseph J. Bevitt
Mitra Safavi-Naeini
ResearchOpen Access02 Apr 2025
Scientific Reports

Volume: 15, P: 1-17
Putative biomarkers for early diagnosis and prognosis of congenital ocular toxoplasmosis

Thádia Evelyn de Araújo
Luara Isabela dos Santos
Roberta M. Castro Romanelli
ResearchOpen Access07 Oct 2020
Scientific Reports

Volume: 10, P: 1-14
Preclinical dental students self-assessment of an improved operative dentistry virtual reality simulator with haptic feedback

Pedro Rodrigues
Francisco Nicolau
José João Mendes
ResearchOpen Access17 Feb 2023
Scientific Reports

Volume: 13, P: 1-11
Non-mechanical steering of the optical beam in spectral-domain optical coherence tomography

Daniel F. Urrego
Gerard J. Machado
Juan P. Torres
ResearchOpen Access27 Jun 2024
Scientific Reports

Volume: 14, P: 1-11
Recombinant Plasmodium vivax circumsporozoite surface protein allelic variants: antibody recognition by individuals from three communities in the Brazilian Amazon

Isabela Ferreira Soares
César López-Camacho
Josué da Costa Lima-Junior
ResearchOpen Access20 Aug 2020
Scientific Reports

Volume: 10, P: 1-14
A candidate vaccine for human visceral leishmaniasis based on a specific T cell epitope-containing chimeric protein protects mice against Leishmania infantum infection

Daniela P. Lage
Patrícia A. F. Ribeiro
Myron Christodoulides
ResearchOpen Access13 Aug 2020
npj Vaccines

Volume: 5, P: 1-13
Climatic suitability, isolation by distance and river resistance explain genetic variation in a Brazilian whiptail lizard

Eliana Faria Oliveira
Pablo Ariel Martinez
Gabriel Correa Costa
Research14 Dec 2017
Heredity

Volume: 120, P: 251-265
Effect of repeated sessions of transcranial direct current stimulation on subjective and objective measures of recovery and performance in soccer players following a soccer match simulation

Fatemeh Shiravand
Pezhman Motamedi
Daniel Gomes da Silva Machado
ResearchOpen Access06 Sept 2024
Scientific Reports

Volume: 14, P: 1-15

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