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Showing 1–17 of 17 results
Advanced filters: Author: Dongya Wu Clear advanced filters

  • Crabgrasses (Digitaria spp.) are invasive upland weeds distributed globally. Here, the authors assemble a telomere-to-telomere reference genome of D. sanguinalis along with its diploid and tetraploid progenitors and reveal lineage-specific introgression of a herbicide resistance-associated gene through population genetics analyses.

    • Yujie Huang
    • Jian Li
    • Longjiang Fan
    ResearchOpen Access
    Nature Communications
    P: 1-19

  • Comparative analyses of rice centromeres from 70 high-quality genomes of the Oryza AA group provide insights into rice centromere evolution and genetic factors that shape these genomic regions.

    • Lingjuan Xie
    • Yujie Huang
    • Dongya Wu
    Research
    Nature Genetics
    Volume: 57, P: 2808-2818

  • This study collected and analysed 3,517 de novo assemblies from 1,575 plant species sequenced since 2000, including 793 newly sequenced species in the past three years. A database named N3: plants, genomes, technologies was developed to accommodate the metadata associated with the sequenced genomes.

    • Lingjuan Xie
    • Xiaojiao Gong
    • Longjiang Fan
    Reviews
    Nature Plants
    Volume: 10, P: 551-566

  • Vavilovian mimicry is the phenomenon whereby weeds evolve to resemble co-located crop plants through unintentional human selection. Here the authors compare mimetic and non-mimetic populations of Echinochloa crus-galli (a weed mimic of rice) to characterize the genomic underpinnings of this case of Vavilovian mimicry.

    • Chu-Yu Ye
    • Wei Tang
    • Longjiang Fan
    Research
    Nature Ecology & Evolution
    Volume: 3, P: 1474-1482

  • A complete genome assembly of a crab-eating macaque, revealing 46% fewer segmental duplications and 3.83 times longer centromeres than those of humans, is presented, enhancing understanding of lineage-specific phenotypes, adaptation and primate evolution.

    • Shilong Zhang
    • Ning Xu
    • Yafei Mao
    Research
    Nature
    Volume: 640, P: 714-721

  • Echinochloa is an important genus in the grass family as many of them are either problematic weeds or domesticated millets. Here, the authors assemble three polyploidy genomes in this genus using the diploid-assisted scaffolding method DipHic and provide genomic insights into the dual roles of some species as weeds and orphan crops.

    • Dongya Wu
    • Enhui Shen
    • Chu-Yu Ye
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16

  • Glioblastoma stem-like cells (GSCs) contribute to therapeutic resistance and recurrence of glioblastomas. Here the authors show that Insulin-like Growth Factor-Binding Protein 5 (IGFBP5) is a ligand for Receptor tyrosine kinase-like Orphan Receptor 1 (ROR1) promotes GSCs invasion.

    • Weiwei Lin
    • Rui Niu
    • Jinlong Yin
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-16

  • The authors have developed a new method, metagenome-wide association study (MGWAS), to compare the combined genetic content of the faecal microbiota of healthy people versus patients with type 2 diabetes; they identify multiple microbial species and metabolic pathways that are associated with either cohort and show that some of these may be used as biomarkers.

    • Junjie Qin
    • Yingrui Li
    • Jun Wang
    Research
    Nature
    Volume: 490, P: 55-60

  • The mouse gut microbiome is catalogued and compared to the human microbiome.

    • Liang Xiao
    • Qiang Feng
    • Karsten Kristiansen
    Research
    Nature Biotechnology
    Volume: 33, P: 1103-1108

  • In Late Triassic lake ecosystems, volcanic ash deposition boosted primary productivity, enhanced organic carbon sequestration, and triggered water-column anoxia, reshaping carbon cycling dynamics, according to geochemical, micropaleontological and sedimentological data from the Yanchang Formation, North China.

    • Quanyou Liu
    • Qian Pang
    • Thomas J. Algeo
    ResearchOpen Access
    Communications Earth & Environment
    Volume: 6, P: 1-10