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Showing 151–200 of 2375 results
Advanced filters: Author: G Cheng Clear advanced filters
  • The ATP-dependent chromatin assembly factor (ACF) generates and maintains nucleosome spacing by constantly moving a nucleosome towards the longer flanking DNA faster than the shorter flanking DNA. But how the enzyme moves back and forth between both sides of a nucleosome to accomplish bidirectional movement is unknown. Nucleosome movement is now shown to depend cooperatively on two ACF molecules, indicating that ACF functions as a dimer of ATPases.

    • Lisa R. Racki
    • Janet G. Yang
    • Geeta J. Narlikar
    Research
    Nature
    Volume: 462, P: 1016-1021
  • Age-related macular degeneration (AMD) is a major cause of blindness worldwide. Here, the authors carry out a two-stage genome-wide association study for AMD and identify three new AMD risk loci, highlighting the shared and distinct genetic basis of the disease in East Asians and Europeans.

    • Ching-Yu Cheng
    • Kenji Yamashiro
    • Chiea Chuen Khor
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-10
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • Mammalian genomes are scattered with repetitive sequences, but their biology remains largely elusive. Here, the authors show that transcription can initiate from short tandem repetitive sequences, and that genetic variants linked to human diseases are preferentially found at repeats with high transcription initiation level.

    • Mathys Grapotte
    • Manu Saraswat
    • Charles-Henri Lecellier
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-18
  • A meta-analysis of genome-wide association studies of type 2 diabetes (T2D) identifies more than 600 T2D-associated loci; integrating physiological trait and single-cell chromatin accessibility data at these loci sheds light on heterogeneity within the T2D phenotype.

    • Ken Suzuki
    • Konstantinos Hatzikotoulas
    • Eleftheria Zeggini
    ResearchOpen Access
    Nature
    Volume: 627, P: 347-357
  • Drug molecules operate through physical interaction with specific cellular targets, and understanding this interaction is important for mechanisms and the potential therapeutic effect of drug candidates. Here, the authors show that bioluminescence resonance energy transfer can be used to monitor the intracellular engagement of a drug with its target.

    • Matthew B. Robers
    • Melanie L. Dart
    • Keith V. Wood
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-10
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • The effect of fluid viscosity on fault mechanics is mainly conjectured by theoretical models. Here, the authors present experimental data from rock friction experiments, showing both static and dynamic friction coefficients to decrease with viscosity and dynamic friction to depend on the Sommerfeld number.

    • C. Cornelio
    • E. Spagnuolo
    • M. Violay
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-7
  • Gas adsorption in porous materials offers an alternative technology for efficient hydrogen isotope separation. Here, the authors report high separation efficiency through isotopologue-induced structural dynamics in a readily scalable manganese-triazole metal-organic framework.

    • Linda Zhang
    • Richard Röß-Ohlenroth
    • Michael Hirscher
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10
  • Lewis acid additive semicarbazide hydrochloride improves the formation of α-phase FAPbI3-based films and promotes a homogeneous vertical distribution of A-site cations through a deprotonation–reprotonation process. The upgraded device performance reaches up to 26.12% with high stability, and mini-module perovskite solar cells achieving 21.47% (area, 11.52 cm2) demonstrate great scalability.

    • Sheng Fu
    • Nannan Sun
    • Yanfa Yan
    Research
    Nature Nanotechnology
    Volume: 20, P: 772-778
  • A genome-wide association meta-analysis study of blood lipid levels in roughly 1.6 million individuals demonstrates the gain of power attained when diverse ancestries are included to improve fine-mapping and polygenic score generation, with gains in locus discovery related to sample size.

    • Sarah E. Graham
    • Shoa L. Clarke
    • Cristen J. Willer
    Research
    Nature
    Volume: 600, P: 675-679
  • The overlap between different phases has hindered the understanding of how each phase affects superconductivity in FeSe. Here, Matsuura et al. achieve a complete separation of non-magnetic nematic and antiferromagnetic phases for FeSe1-x S x , observing a tetragonal phase in between with a strikingly enhanced T c.

    • K. Matsuura
    • Y. Mizukami
    • T. Shibauchi
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-6
  • Amado et al. develop a gene therapy for sporadic ALS using motor neuron-targeting AAVs to deliver RNAi targeting ataxin-2. In a mouse model, survival, strength, and disease-related pathology are improved; and human motor neurons are strongly transduced.

    • Defne A. Amado
    • Ashley B. Robbins
    • Beverly L. Davidson
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • DNA methylation is a critical component for repression of fetal haemoglobin in adult blood cells. Removing DNA methylation from the fetal haemoglobin promoter effectively upregulates the gene, opening avenues for the treatment of blood disorders.

    • Henry W. Bell
    • Ruopeng Feng
    • Merlin Crossley
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Comprehensive genomic and transcriptomics analyses of more than 1,300 cases of childhood T-lineage acute lymphoblastic leukaemia identify 15 distinct subtypes that are associated with specific outcomes.

    • Petri Pölönen
    • Danika Di Giacomo
    • David T. Teachey
    Research
    Nature
    Volume: 632, P: 1082-1091
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • Radiometrically dated speleothems are used to constrain the timing and duration of Marine Isotope Stage 11c. Early low-to-middle latitude warming in the North Atlantic led to an exceptionally developed interglacial despite weak insolation forcing.

    • Hsun-Ming Hu
    • Gianluca Marino
    • Chuan-Chou Shen
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-11
  • An optical tweezer array of individual polyatomic molecules is created, revealing the obvious state control in the tweezer array and enabling further research on polyatomic molecules with diverse spatial arrangements.

    • Nathaniel B. Vilas
    • Paige Robichaud
    • John M. Doyle
    Research
    Nature
    Volume: 628, P: 282-286
  • 14C can be absorbed by trees as a result of the interaction of cosmic rays produced by high-energy phenomena with the Earth’s atmosphere. Here, the authors observe a rapid increase of 14C in an ancient buried tree from BC 3372 to BC 3371, and suggest that it could originate from a large solar proton event.

    • F. Y. Wang
    • H. Yu
    • K. S. Cheng
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-5
  • Loss-of-function mutations in Myosin Binding Protein C3, MYBPC3, are the most common genetic cause of hypertrophic cardiomyopathy. Here, the authors present an AAV9-based gene therapy system with an optimized expression cassette with minimal promoter and cis-regulatory elements that can ameliorate cardiac functions and prolong survival in a murine MYBPC3-deficient model.

    • Amara Greer-Short
    • Anna Greenwood
    • Laura M. Lombardi
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Designer Receptors Exclusively Activated by Designer Drugs (DREADDs) are a powerful tool for neuroscience, but the standard DREADD ligand, CNO, has significant drawbacks. Here the authors report two novel high-potency DREADD ligands and a novel DREADD radiotracer for imaging purposes.

    • Jordi Bonaventura
    • Mark A. G. Eldridge
    • Michael Michaelides
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Multiple computational methods have been developed to understand how mutations drive tumourigenesis, but their insights are largely non-overlapping. Here, the authors introduce NetFlow3D, a framework for integrating protein structure and interaction networks to map the mechanistic effects of somatic mutations in cancer.

    • Yingying Zhang
    • Alden K. Leung
    • Haiyuan Yu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Hydroxychloroquine and chloroquine have been investigated as a potential treatment for Covid-19 in several clinical trials. Here the authors report a meta-analysis of published and unpublished trials, and show that treatment with hydroxychloroquine for patients with Covid-19 was associated with increased mortality, and there was no benefit from chloroquine.

    • Cathrine Axfors
    • Andreas M. Schmitt
    • Lars G. Hemkens
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10