Nature Search

Human skeletal muscle fiber heterogeneity beyond myosin heavy chains

Moreno-Justicia and colleagues report transcriptomic and proteomic pipelines to explore heterogeneity within human skeletal muscle fibers, identifying sources of fiber heterogeneity in healthy individuals and children with nemaline myopathy.

Roger Moreno-Justicia
Thibaux Van der Stede
Atul S. Deshmukh
ResearchOpen Access19 Feb 2025
Nature Communications

Volume: 16, P: 1-18
Author Correction: Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Marieke Vromman
Jasper Anckaert
Pieter-Jan Volders
Amendments and Corrections17 Jan 2025
Nature Methods

Volume: 22, P: 448
Blood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profiling

Here the authors provide a comprehensive evaluation of important pre-analytical variables affecting extracellular RNA quantification and analysis in the exRNAQC study, examining eight RNA purification methods, ten blood collection tubes, and three time intervals for blood processing.

Jasper Anckaert
Francisco Avila Cobos
Nurten Yigit
ResearchOpen Access15 May 2025
Nature Communications

Volume: 16, P: 1-17
Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs

Lucia Lorenzi
Hua-Sheng Chiu
Pieter Mestdagh
Amendments and Corrections28 Jun 2021
Nature Biotechnology

Volume: 39, P: 1467
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

This study describes benchmarking and validation of computational tools for detecting circRNAs, finding most to be highly precise with variations in sensitivity and total detection. The study also finds over 315,000 putative human circRNAs.

Marieke Vromman
Jasper Anckaert
Pieter-Jan Volders
Research13 Jul 2023
Nature Methods

Volume: 20, P: 1159-1169
MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity

A knowledgebase developed for increased the transparency of reporting in spheroid research.

Arne Peirsman
Eva Blondeel
Olivier De Wever
ResearchOpen Access01 Nov 2021
Nature Methods

Volume: 18, P: 1294-1303
The RNA Atlas expands the catalog of human non-coding RNAs

The human transcriptome from 300 tissues and cell lines reveals novel non-coding RNAs.

Lucia Lorenzi
Hua-Sheng Chiu
Pieter Mestdagh
Research17 Jun 2021
Nature Biotechnology

Volume: 39, P: 1453-1465
EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research

Jan Van Deun
Pieter Mestdagh
An Hendrix
Comments & Opinion28 Feb 2017
Nature Methods

Volume: 14, P: 228-232
The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival

Shanna Dewaele
Louis Delhaye
Pieter Mestdagh
ResearchOpen Access10 Sept 2021
Oncogene

Volume: 41, P: 15-25
Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background

Sabitri Ghimire
Margot Van der Jeught
Björn Heindryckx
ResearchOpen Access12 Apr 2018
Scientific Reports

Volume: 8, P: 1-11
Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine Everaert
Hetty Helsmoortel
Jo Vandesompele
ResearchOpen Access26 Nov 2019
Scientific Reports

Volume: 9, P: 1-16
Correction to: The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival

Shanna Dewaele
Louis Delhaye
Pieter Mestdagh
Amendments and CorrectionsOpen Access15 Nov 2021
Oncogene

Volume: 41, P: 146
Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions

Kathleen Schoofs
Annouck Philippron
Katleen De Preter
ResearchOpen Access14 Mar 2022
Scientific Data

Volume: 9, P: 1-12

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Human skeletal muscle fiber heterogeneity beyond myosin heavy chains

Author Correction: Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Blood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profiling

Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity

The RNA Atlas expands the catalog of human non-coding RNAs

EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research

The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival

Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Correction to: The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival

Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions

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