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Showing 451–500 of 1560 results
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  • Analysis of mitochondrial genomes (mtDNA) by using whole-genome sequencing data from 2,658 cancer samples across 38 cancer types identifies hypermutated mtDNA cases, frequent somatic nuclear transfer of mtDNA and high variability of mtDNA copy number in many cancers.

    • Yuan Yuan
    • Young Seok Ju
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 342-352
  • How arable farming affects soil fungal biogeography is poorly understood. Here, the authors find that prevalent fungal groups become more abundant, whereas rare groups become fewer or absent in arable lands across Europe, suggesting a biotic homogenization due to arable farming.

    • Samiran Banerjee
    • Cheng Zhao
    • Marcel G. A. van der Heijden
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • The influence of stress relaxation of the extracellular matrix on the formation of intestinal organoids was investigated. It was shown that a stress-relaxing synthetic matrix promotes crypt budding through increased symmetry breaking and niche cell formation.

    • Antonius Chrisnandy
    • Delphine Blondel
    • Matthias P. Lutolf
    Research
    Nature Materials
    Volume: 21, P: 479-487
  • Selenium and copper are two essential trace elements whose homeostasis and distribution is regulated by hepatic release of selenoprotein P (SELENOP) and ceruloplasmin, respectively. Here, the authors show that excessive copper results in hepatic SELENOP accumulation in the trans Golgi which might limit the selenium transport to peripheral organs.

    • Maria Schwarz
    • Caroline E. Meyer
    • Anna P. Kipp
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • A computational approach to generate reference-free protein families from the sequence space in metagenomes reveals an enormously diverse functional space.

    • Georgios A. Pavlopoulos
    • Fotis A. Baltoumas
    • Nikos C. Kyrpides
    ResearchOpen Access
    Nature
    Volume: 622, P: 594-602
  • Droplet GaAs quantum dots are interconnectable sources of single photons. Near-identical photons from remote GaAs quantum dots now show an interference visibility of 93% with quantum entanglement between the separate photon streams from the two sources.

    • Liang Zhai
    • Giang N. Nguyen
    • Richard J. Warburton
    Research
    Nature Nanotechnology
    Volume: 17, P: 829-833
  • RNA variants derived from cancer-associated RNA editing events can be a source of neoantigens. Here, based on a proteogenomic pipeline combining DNA and RNA sequencing with MS-based immunopeptidomics, the authors identity and validate potential neoantigen candidates in patients with different tumor entities, highlighting RNA as important neoantigen source.

    • Celina Tretter
    • Niklas de Andrade Krätzig
    • Angela M. Krackhardt
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-22
  • Uptake of vitamin B12 is important for colonisation of the gut by Bacteroides species. Here the authors characterise B12 uptake in Bacteroides thetaiotaomicron, mediated by outer membrane protein complexes consisting of surface-exposed BtuG lipoproteins and BtuB TonB-dependent transporters.

    • Javier Abellon-Ruiz
    • Kalyanashis Jana
    • Bert van den Berg
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-18
  • Using three-dimensional correlative light and electron microscopy of Lewy bodies and Lewy neurites in postmortem brains of Parkinson’s disease patients, researchers show that the major constituents are membranes rather than proteinaceous filaments.

    • Sarah H. Shahmoradian
    • Amanda J. Lewis
    • Matthias E. Lauer
    Research
    Nature Neuroscience
    Volume: 22, P: 1099-1109
  • Structure of human nuclear pore complex in its cellular environment reveals a substantially dilated central channel and shows that its nucleoplasmic and cytoplasmic rings restrict channel dimensions and create membrane asymmetry at the inner ring.

    • Anthony P. Schuller
    • Matthias Wojtynek
    • Thomas U. Schwartz
    ResearchOpen Access
    Nature
    Volume: 598, P: 667-671
  • Amphiphilic proteins act as building blocks for the de novo formation of membrane-based organelles within Escherichia coli. The organelles can be selectively functionalized in vivo with unnatural amino acids and hence may permit chemical reactions inside the cell that have not been possible so far.

    • Matthias C. Huber
    • Andreas Schreiber
    • Stefan M. Schiller
    Research
    Nature Materials
    Volume: 14, P: 125-132
  • As more intersection points between platelets and the immune system are found, the role of platelets for vessel growth in the adult organism remains unclear. The authors demonstrate that platelets negatively modulate revascularization through CXCL4 secretion induced by activation C5aR1 on their surface.

    • Henry Nording
    • Lasse Baron
    • Harald F. Langer
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-22
  • Direct dates for human remains found in association with Initial Upper Palaeolithic artefacts at Bacho Kiro Cave (Bulgaria) demonstrate the presence of Homo sapiens in the mid-latitudes of Europe before 45 thousand years ago.

    • Jean-Jacques Hublin
    • Nikolay Sirakov
    • Tsenka Tsanova
    Research
    Nature
    Volume: 581, P: 299-302
  • The insulin receptor plays a key role in many physiological processes, yet how insulin effects receptor signaling at the structural level remains incomplete. Here the authors present a high-resolution cryo-EM structure of a high-affinity form of the insulin-bound insulin receptor ectodomain that sheds light on the mechanism of signal transduction.

    • Felix Weis
    • John G. Menting
    • Michael C. Lawrence
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-10
  • Synonymous mutations do not alter amino acid sequence but may exert oncogenic effects in other ways. Here, the authors present a catalogue of synonymous mutations in cancer and characterise their properties.

    • Yogita Sharma
    • Milad Miladi
    • Sven Diederichs
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-14
  • Inflammatory response to malaria pathogen Plasmodium falciparumcan be triggered by infected red blood cell-derived extracellular vesicles (EVs). This study shows these EVs contain functional microRNA-Argonaute 2 complex that modulates gene expression and alter vascular barrier properties.

    • Pierre-Yves Mantel
    • Daisy Hjelmqvist
    • Matthias Marti
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-15
  • Systemic AL amyloidosis is caused by misfolding of immunoglobulin light chains and is one of the most frequently occurring forms of systemic amyloidosis. Here the authors present the 3.3 Å cryo-EM structure of a λ1 AL amyloid fibril that was isolated from an explanted human heart.

    • Lynn Radamaker
    • Yin-Hsi Lin
    • Marcus Fändrich
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-8
  • Whether there are conserved nucleic acid (NA) binding proteins across species is not fully known. Using data from human, mouse and fly, the authors identify common binders, implicate TAOKs and show that these kinases bind NAs across species and promote virus defence in mammalian cells.

    • Friederike L. Pennemann
    • Assel Mussabekova
    • Andreas Pichlmair
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-22
  • Hippocampal synaptic dysfunctions are an early symptom of Alzheimer’s disease. Here, the authors find adenosine A2A receptors are up-regulated in APP/PS1 model mice and that deleting or blocking receptor activity helps alleviate plasticity and memory impairments.

    • Silvia Viana da Silva
    • Matthias Georg Haberl
    • Christophe Mulle
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-11
  • Methylmalonic acidemia is an inherited metabolic disease caused by loss or mutation of the enzyme MMUT. Here the authors use cell and animal models to show that MMUT mutations lead to defective mitophagy and stress in kidney cells, contributing to the pathogenesis in methylmalonic acidemia patients.

    • Alessandro Luciani
    • Anke Schumann
    • Olivier Devuyst
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-21
  • The adhesion receptor CD2 plays an important role in the full activation of T cells. Dustin and colleagues show that CD2 occupies a region in the periphery of the immunological synapse where it amplifies cognate antigen signals, whereas the presence of PD-1 disrupts this effect.

    • Philippos Demetriou
    • Enas Abu-Shah
    • Michael L. Dustin
    Research
    Nature Immunology
    Volume: 21, P: 1232-1243
  • The authors present nanosensor chemical cytometry, based on an array of nIR fluorescent single walled carbon nanotube integrated along a microfluidic channel. The lensing effect of the flowing cells allows for extracting information, and correlating biomolecular information with physical properties.

    • Soo-Yeon Cho
    • Xun Gong
    • Michael S. Strano
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • The surfactant-like protein Ki-67 mediates the clustering of chromosomes during mitotic exit, which displaces large cytoplasmic molecules from the future nuclear space and thus enables the separation of cytoplasmic and nuclear components before the nuclear envelope reforms.

    • Sara Cuylen-Haering
    • Mina Petrovic
    • Daniel W. Gerlich
    Research
    Nature
    Volume: 587, P: 285-290
  • HnRNP R regulates the axonal transcriptome. Here the authors show that hnRNP R is a component of translation initiation complexes and interacts with O-linked β-N-acetylglucosamine (O-GlcNAc) transferase (Ogt), promoting O-GlcNAcylation of eIF4G.

    • Abdolhossein Zare
    • Saeede Salehi
    • Michael Sendtner
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-20
  • Medulloblastomas (MBs) are highly heterogeneous paediatric brain tumours that remain challenging to treat. Here, the authors integrate proteomics, epigenomics, transcriptomics and post-translational modification analyses to find molecular subgroups and potential therapeutic targets in MB tumours.

    • Shweta Godbole
    • Hannah Voß
    • Julia E. Neumann
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-24
  • Remotely sensed NDVI data and contemporary field data from 84 grasslands on 6 continents show increasing divergence in aboveground plant biomass between sites in different bioclimatic regions.

    • Andrew S. MacDougall
    • Ellen Esch
    • Eric W. Seabloom
    Research
    Nature Ecology & Evolution
    Volume: 8, P: 1877-1888
  • A protein interaction network constructed with data from high-throughput affinity enrichment coupled to mass spectrometry provides a highly saturated yeast interactome with 31,004 interactions, including low-abundance complexes, membrane protein complexes and non-taggable protein complexes.

    • André C. Michaelis
    • Andreas-David Brunner
    • Matthias Mann
    ResearchOpen Access
    Nature
    Volume: 624, P: 192-200
  • High-energy interlayer excitons in van der Waals semiconducting transition metal dichalcogenides lie far above the bandgap and emit in the ultraviolet range.

    • Kai-Qiang Lin
    • Paulo E. Faria Junior
    • John M. Lupton
    Research
    Nature Nanotechnology
    Volume: 19, P: 196-201
  • The synthesis of amides is a key technology for the preparation of fine and bulk chemicals in industry. Here, the authors present the reductive amidation of esters with nitro compounds under additivesfree conditions as a robust methodology for amide synthesis.

    • Jie Gao
    • Rui Ma
    • Matthias Beller
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • Paediatric high-grade gliomas with MYCN amplification (HGG-MYCN) are rare and highly aggressive. Here, the authors generate a mouse model for HGG-MYCN that can recapitulate the histological and molecular profiles of the human tumours, and perform high-throughput drug screening to identify potential treatment options.

    • Melanie Schoof
    • Shweta Godbole
    • Ulrich Schüller
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • Extensive lysosomal damage can result in cell death but how limited protease leakage affects cytoplasmic organelles in viable cells is not well understood. Here the authors show that limited lysosomal damage leads to changes in the mitochondrial proteome and the modulation of macrophage immunometabolism.

    • Claudio Bussi
    • Tiaan Heunis
    • Maximiliano G. Gutierrez
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-22
  • Cellular pathways modulating longevity and stress resistance are known to affect protein translation. Here the authors show that the RNA methyltransferase, Nsun5, or its yeast homologue Rcm1, regulates lifespan of three different model organisms by modifying ribosomal RNA at a specific cytosine residue.

    • Markus Schosserer
    • Nadege Minois
    • Johannes Grillari
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-17
  • Heart failure is a major public health issue but due to our poor disease understanding the current therapies are symptomatic. Here the authors identify Myoscape as a novel cardiac protein regulating membrane localization of the L-type calcium channel and heart's contractile force, thus promising new therapeutic avenues for heart failure.

    • Matthias Eden
    • Benjamin Meder
    • Norbert Frey
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-16
  • Replication stress has been associated with transient remodelling of replication intermediates into reversed forks, followed by efficient fork restart. Here the authors systematically analyse the role of RAD51 paralogs in these transactions, providing insights on the mechanistic role of different complexes of these proteins.

    • Matteo Berti
    • Federico Teloni
    • Massimo Lopes
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Medin promotes the formation of vascular aggregates with amyloid-β in mouse models and in human patients with Alzheimer’s disease, and is associated with vascular defects and cognitive decline.

    • Jessica Wagner
    • Karoline Degenhardt
    • Jonas J. Neher
    ResearchOpen Access
    Nature
    Volume: 612, P: 123-131
  • The precise mechanisms that cause human obesity remain unknown. Here the authors illustrate how increased expression of Cadm1, a mediator of synapse assembly, is relevant to weight gain. Reduction of Cadm1 in multiple brain regions promoted weight loss, and these observations provide insight into the neuronal pathways contributing to obesity.

    • Thomas Rathjen
    • Xin Yan
    • Matthew N Poy
    Research
    Nature Neuroscience
    Volume: 20, P: 1096-1103
  • Chordomas are rare bone tumors with limited therapeutic options. Here, the authors identify molecular alterations associated with defective homologous recombination DNA repair in advanced chordomas and report prolonged response in a patient treated with a PARP inhibitor, which later acquired resistance due to a newly gained PARP1 mutation.

    • Stefan Gröschel
    • Daniel Hübschmann
    • Stefan Fröhling
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-9
  • Genomic analysis of 491 medulloblastoma samples, including methylation profiling of 1,256 cases, effectively assigns candidate drivers to most tumours across all molecular subgroups.

    • Paul A. Northcott
    • Ivo Buchhalter
    • Peter Lichter
    ResearchOpen Access
    Nature
    Volume: 547, P: 311-317