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Showing 51–100 of 309 results
Advanced filters: Author: Morgan N. Driver Clear advanced filters
  • Clonal hematopoiesis, which increases with age and is implicated in a variety of age-related diseases, is shown here to be associated with a greater risk of acute kidney injury and worse outcome following injury, as demonstrated using multiple patient cohorts, Mendelian randomization analysis and mechanistic studies in mouse disease models.

    • Caitlyn Vlasschaert
    • Cassianne Robinson-Cohen
    • Alexander G. Bick
    ResearchOpen Access
    Nature Medicine
    Volume: 30, P: 810-817
  • Muscular dystrophies are characterised by extensive myofibre cell death. Here Morgan et al. show that RIPK3-mediated necroptosis contributes to myofibre cell death in Duchenne muscular dystrophy, and that RIPK3 deletion protects dystrophic mice against myofibre degeneration.

    • Jennifer E. Morgan
    • Alexandre Prola
    • Maximilien Bencze
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-10
  • Spatially and temporally resolved data can improve our understanding of evolution and treatment resistance in multiple myeloma (MM). Here, the authors analyse spatial and longitudinal heterogeneity in MM patients using multi-region sequencing, and identify subclones associated with relapse and therapy resistance.

    • Leo Rasche
    • Carolina Schinke
    • Niels Weinhold
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-13
  • Metalloenzymes play essential roles in biology but controlling outer-sphere interactions to influence their functions remains a significant challenge. Here, the authors demonstrate how variations in the primary, secondary, and outer coordination-sphere interactions of de novo designed artificial copper proteins influence their catalytic and electron transfer properties.

    • Divyansh Prakash
    • Suchitra Mitra
    • Saumen Chakraborty
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Minority groups are often disproportionately exposed to air pollution, but what drives these disparities is difficult to analyse. Using the economic shutdown associated with the 2020 COVID-19 shelter-in-place orders, this study estimates pollution exposure disparities caused by the in-person economy in California.

    • Richard Bluhm
    • Pascal Polonik
    • Jennifer A. Burney
    Research
    Nature Sustainability
    Volume: 5, P: 509-517
  • IFNy can polarize macrophages in the tumour microenvironment to an inflammatory state and thereby contributes to their anti-tumour function. Here the authors show an underlying mechanism in this process is IFNy-driven STAT1 occupancy and activation of NRE1, a regulatory region within the NAMPT gene, thereby implicating inducible NAD salvage synthesis in TAM functions.

    • Thomas B. Huffaker
    • H. Atakan Ekiz
    • Ryan M. O’Connell
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-19
  • The southwest corner of Western Australia has been subject to a serious drought in recent decades, whose ultimate cause remains unclear. A comparison of precipitation records in the area of drought and an ice core from East Antarctica reveal a significant inverse correlation between precipitation in the two locations, and suggest that the current drought may be highly unusual compared with the past 750 years of variability.

    • Tas D. van Ommen
    • Vin Morgan
    Research
    Nature Geoscience
    Volume: 3, P: 267-272
  • In multiple myeloma, malignant cells expand within bone marrow. Here, the authors use multi-region sequencing in patient samples to analyse spatial clonal architecture and heterogeneity, providing novel insight into multiple myeloma progression and evolution.

    • L. Rasche
    • S. S. Chavan
    • N. Weinhold
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-11
  • Circulating tumour DNA profiling in early-stage non-small-cell lung cancer can be used to track single-nucleotide variants in plasma to predict lung cancer relapse and identify tumour subclones involved in the metastatic process.

    • Christopher Abbosh
    • Nicolai J. Birkbak
    • Charles Swanton
    Research
    Nature
    Volume: 545, P: 446-451
  • A genome-wide association meta-analysis study of blood lipid levels in roughly 1.6 million individuals demonstrates the gain of power attained when diverse ancestries are included to improve fine-mapping and polygenic score generation, with gains in locus discovery related to sample size.

    • Sarah E. Graham
    • Shoa L. Clarke
    • Cristen J. Willer
    Research
    Nature
    Volume: 600, P: 675-679
  • Joana Carlevaro-Fita, Andrés Lanzós et al. present the Cancer LncRNA Census (CLC), a manually curated dataset of 122 long noncoding RNAs (lncRNAs) with experimentally-validated functions in cancer based on data from the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. CLC lncRNAs have unique gene features, and a number display evidence for cancer-driving functions that are conserved from humans to mice.

    • Joana Carlevaro-Fita
    • Andrés Lanzós
    • Christian von Mering
    ResearchOpen Access
    Communications Biology
    Volume: 3, P: 1-16
  • Crossover numbers and positions are tightly controlled but the mechanism involved is still obscure. Here, the authors, using quantitative super-resolution cytogenetics and mathematical modelling, show that diffusion mediated coarsening of HEI10, an E3-ligase domain containing protein, may explain meiotic crossover positioning in Arabidopsis.

    • Chris Morgan
    • John A. Fozard
    • Martin Howard
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-11
  • The mechanisms underlying adaptive response to the stress elicited by radiotherapy in glioma cells remains unclear. Here, the authors show that therapeutic ionizing radiation induces rapid genome-wide chromatin reorganization to facilitate P-TEFb-mediated nascent transcriptional induction, which could be targeted to sensitize radiotherapy response in glioma.

    • Faye M. Walker
    • Lays Martin Sobral
    • Nathan A. Dahl
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Circular extrachromosomal DNA in high-risk medulloblastoma contributes to tumor heterogeneity and associates with relapse and survival. Enhancer rewiring events involving known oncogenes are frequent events, affecting transcription and proliferation.

    • Owen S. Chapman
    • Jens Luebeck
    • Lukas Chavez
    ResearchOpen Access
    Nature Genetics
    Volume: 55, P: 2189-2199
  • Structural characterization of three paralogous toxin–antitoxin complexes illuminates how each antitoxin specifically targets its cognate toxin, including auxiliary neutralization interfaces that confer evolvability while preventing loss of activity.

    • Grzegorz J. Grabe
    • Rachel T. Giorgio
    • Sophie Helaine
    Research
    Nature Chemical Biology
    Volume: 17, P: 1296-1304
  • Chromothripsis is associated with unfavourable outcomes in multiple myeloma (MM), but its detection usually requires whole genome sequencing. Here the authors develop an approach to detect chromothripsis in MM based on copy-number signatures that also works with whole exome sequencing data.

    • Kylee H. Maclachlan
    • Even H. Rustad
    • Francesco Maura
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-11
  • In multiple myeloma, disease progresses via seeding to different anatomic sites and clonal expansion. Here, utilising autopsy material, the authors show that systemic seeding accelerates at relapse following treatment.

    • Heather J. Landau
    • Venkata Yellapantula
    • Francesco Maura
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • This study examines the impact of herbivorous insects on biogeochemical cycling within forests. From a global network of 74 plots within 40 mature, undisturbed broadleaved forests, they show that background levels of insect herbivory are sufficiently large to alter both ecosystem element cycling and influence terrestrial carbon cycling.

    • Bernice C. Hwang
    • Christian P. Giardina
    • Daniel B. Metcalfe
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-11
  • The epigenetic mechanisms underlying pancreatic ductal adenocarcinoma (PDAC) are not fully elucidated. Here, the authors reveal a druggable super-enhancer-mediated RNA-binding protein cascade that supports PDAC growth through enhanced mRNA translation.

    • Corina E. Antal
    • Tae Gyu Oh
    • Ronald M. Evans
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • Blastic plasmacytoid dendritic cell neoplasm (BPDCN) arises from clonal (premalignant) haematopoietic precursors in the bone marrow, and BPDCN skin tumours first develop at sun-exposed anatomical sites and are distinguished by clonally expanded mutations induced by ultraviolet radiation.

    • Gabriel K. Griffin
    • Christopher A. G. Booth
    • Andrew A. Lane
    ResearchOpen Access
    Nature
    Volume: 618, P: 834-841
  • The neural circuits underlying rewarding effects of drugs of abuse and natural rewards are not fully understood. Here the authors investigate the role of the infralimbic cortex to nucleus accumbens shell pathway during heroin or food choice in rats.

    • Jasper A. Heinsbroek
    • Giuseppe Giannotti
    • Jamie Peters
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • The mechanisms regulating mitochondrial architecture in neurons remain unclear. The authors report that in dendrites, mitochondria structure is specified by the CAMKK2-AMPK pathway through compartment-specific and activity-dependent levels of fission.

    • Daniel M. Virga
    • Stevie Hamilton
    • Tommy L. Lewis Jr
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Whole-genome bisulfite sequencing along with whole-genome and transcriptome sequencing of 100 prostate cancer metastases identifies genomic regions that are differentially methylated during disease progression and a novel epigenomic subtype.

    • Shuang G. Zhao
    • William S. Chen
    • Felix Y. Feng
    Research
    Nature Genetics
    Volume: 52, P: 778-789
  • Common variable immunodeficiency (CVID) is an inborn error of immunity, characterized clinically by low immunoglobulin levels, poor vaccine responses and recurrent sinopulmonary infections. Here authors show that the proportion of Vδ1+ γδ T cells in CVID is higher than in healthy controls and these cells respond to persistent cytomegalovirus viremia with expansion and phenotypic alterations.

    • Samantha Chan
    • Benjamin Morgan
    • Lauren J. Howson
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • Dietary protein dilution, where protein is reduced and replaced by other nutrient sources without caloric restriction, promotes metabolic health via the hepatokine Fgf21. Here, the authors show that essential amino acids threonine and tryptophan are necessary and sufficient to induce these effects.

    • Yann W. Yap
    • Patricia M. Rusu
    • Adam J. Rose
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Here, Tisza, Dekker, and colleagues perform large scale analysis of genome methylation in the gut commensal and pathogen, Bacteroides fragilis group, revealing immense methyl motif diversity and evidence of widespread methyltransferase exchange among phages.

    • Michael J. Tisza
    • Derek D. N. Smith
    • John P. Dekker
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Environmental variability is one potential driver of behavioural and cultural diversity in humans and other animals. Here, the authors show that chimpanzee behavioural diversity is higher in habitats that are more seasonal and historically unstable, and in savannah woodland relative to forested sites.

    • Ammie K. Kalan
    • Lars Kulik
    • Hjalmar S. Kühl
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Although immune checkpoint blockade is a standard treatment for patients with malignant mesothelioma, only a minority of patients exhibit radiological response. In a phase II clinical trial (MIST4) investigating the efficacy, safety and molecular correlates of response following treatment with atezolizumab and bevacizumab, the authors demonstrate that the gut microbiota may modulate responsiveness to treatment.

    • Min Zhang
    • Aleksandra Bzura
    • Dean A. Fennell
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • The regulation of the distinct intrinsic phenotypic states in melanoma remain poorly characterised. Here, multi-omics analysis for a panel of 68 early passage melanoma cell lines reveals that cancer cell intrinsic transcriptomic programs are associated with distinct immune features.

    • Miles C. Andrews
    • Junna Oba
    • Scott E. Woodman
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-18
  • A system employing liquid-handling robotics and an integrated mobile microscope enables the automated culture, sample collection and in situ microscopy imaging of up to ten fluidically coupled organ chips within a standard tissue-culture incubator.

    • Richard Novak
    • Miles Ingram
    • Donald E. Ingber
    Research
    Nature Biomedical Engineering
    Volume: 4, P: 407-420
  • The authors present an integrative framework for identifying structural variants (SVs) in cancer that applies optical mapping, Hi-C, and whole-genome sequencing. They find SVs affecting distal regulatory sequences, DNA replication, and three-dimensional chromatin structure.

    • Jesse R. Dixon
    • Jie Xu
    • Feng Yue
    Research
    Nature Genetics
    Volume: 50, P: 1388-1398
  • Loss of function mutation studies has provided insights into regulatory T-cell biology. Here Cardinez et al explore the effects of a murine Ikbkb (IKK2) gain of function model and show IKK2 activity results in the expansion of regulatory T cells with partial effector function and suggest an IKK2 dose-dependent relation between psoriatic immunopathology and psoriatic arthritis.

    • Chelisa Cardinez
    • Yuwei Hao
    • Matthew C. Cook
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • Targeting genotype-independent abnormalities may overcome therapy resistance in glioblastoma despite intratumoral genomic heterogeneity. Here, the authors show that glioblastoma radiation resistance is promoted by purine metabolism and can be overcome by inhibitors of purine synthesis.

    • Weihua Zhou
    • Yangyang Yao
    • Daniel R. Wahl
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • This paper reports integrative molecular analyses of urothelial bladder carcinoma at the DNA, RNA, and protein levels performed as part of The Cancer Genome Atlas project; recurrent mutations were found in 32 genes, including those involved in cell-cycle regulation, chromatin regulation and kinase signalling pathways; chromatin regulatory genes were more frequently mutated in urothelial carcinoma than in any other common cancer studied so far.

    • John N. Weinstein
    • Rehan Akbani
    • Greg Eley
    ResearchOpen Access
    Nature
    Volume: 507, P: 315-322
  • Anthropogenic eutrophication is a driver of plant community shifts in many grassland ecosystems. Here, the authors use data from a globally distributed experiment to assess how nutrient addition affects multiple facets of grassland ecological stability and their correlations.

    • Qingqing Chen
    • Shaopeng Wang
    • Yann Hautier
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-9
  • Here, Wang et al. use metagenomic sequencing to explore the impact of antibiotic treatment for Helicobacter pylori on the gut virome community in infected patients, showing that recurrent treatment leads to a lower virus community diversity and altered virus-bacteria interactions, compared with treatment naive patients.

    • Lingling Wang
    • Haobin Yao
    • Wai K. Leung
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11