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Showing 201–250 of 1179 results
Advanced filters: Author: Rachel Turn Clear advanced filters
  • Whether the Wnt enhanceosome’ components BCL9/9l can affect intestinal homeostasis and tumorigenesis is still unclear. Using conditional Bcl9/9l KO mice, the authors of this study show that the BCL9/9l complex is required for intestinal stem cells to drive tissue regeneration and that loss of BCL9/9l suppresses Wnt-driven transformation.

    • David M. Gay
    • Rachel A. Ridgway
    • Owen J. Sansom
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • Identifying abnormalities in medical images across different viewing angles and body parts is a time-consuming task. Deep learning techniques hold great promise for supporting radiologists and improving patient triage decisions. A new study tests the viability of such approaches in resource-limited settings, exploring the effect of pretraining, dataset size and choice of deep learning model in the task of abnormality detection in lower-limb radiographs.

    • Maya Varma
    • Mandy Lu
    • Bhavik N. Patel
    Research
    Nature Machine Intelligence
    Volume: 1, P: 578-583
  • Relevant features of T cell repertoire in human cancer remain to be delineated. Here the authors show, by TCR sequencing in a large cohort of lung cancer patients, that while a majority of T cell clones are shared between tumor and adjacent lung tissue, less frequent tumor-unique T cell clones correlate with worse prognosis.

    • Alexandre Reuben
    • Jiexin Zhang
    • Jianjun Zhang
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Threshold-like relationships between fitness & phenotype are ubiquitous in nature. Erdoğan et al. use experimental & simulated evolution of an antibiotic resistance enzyme to show how such relationships allow the emergence of standing phenotypic variation under static environmental conditions.

    • Ayşe Nisan Erdoğan
    • Pouria Dasmeh
    • Nobuhiko Tokuriki
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Baker et al. show that mitochondrial stress recovery requires mobilization of lipid droplet triacylglycerol stores to facilitate cardiolipin biosynthesis and mitochondrial biogenesis.

    • Zakery N. Baker
    • Yunyun Zhu
    • David J. Pagliarini
    ResearchOpen Access
    Nature Cell Biology
    Volume: 27, P: 298-308
  • Newly evolved Xanthomonas citri pv. malvacearum isolates triggers recent bacterial blight outbreaks in cotton. Here, the authors show that a recently evolved TALE, Tal7b, activates host susceptibility genes GhSWEET14a and GhSWEET14b rather than GhSWEET10 to confer pathogenicity in these new isolates.

    • Brendan W. Mormile
    • Yan Yan
    • Libo Shan
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • An efficient method of cyto-swapping by haploid induction using a CENH3 mutation is reported in maize, to convert commercial germplasm to cytoplasmic male sterility for hybrid seed production.

    • Esteban Bortiri
    • Rebecca Selby
    • Tim Kelliher
    Research
    Nature Plants
    Volume: 10, P: 567-571
  • In the Drosophila antennal lobe, there are several projection neurons (PNs) that are postsynaptic to each glomerulus. Here, the authors report that activity in these 'sister' PNs is correlated at a fine temporal scale. The predominant source of correlated activity is shared input from olfactory receptor neurons, with a smaller contribution from reciprocal PN-PN connections.

    • Hokto Kazama
    • Rachel I Wilson
    Research
    Nature Neuroscience
    Volume: 12, P: 1136-1144
  • Changes in Arctic sea ice volume are difficult to quantify. Five years of satellite data reveal a reduction in autumn sea ice volume in 2010–2012, but a sharp increase in 2013 and 2014, suggesting that ice volume can recover quickly.

    • Rachel L. Tilling
    • Andy Ridout
    • Duncan J. Wingham
    Research
    Nature Geoscience
    Volume: 8, P: 643-646
  • Cooperative signalling between receptor tyrosine kinases (RTKs) and integrins is thought to occur at the cell surface. Here the authors show that β1 integrin influences signalling of an RTK, c-Met, from a novel intracellular compartment they call autophagy-related endomembranes.

    • Rachel Barrow-McGee
    • Naoki Kishi
    • Stéphanie Kermorgant
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-18
  • Meta-analysis of genome-wide association studies on Alzheimer’s disease and related dementias identifies new loci and enables generation of a new genetic risk score associated with the risk of future Alzheimer’s disease and dementia.

    • Céline Bellenguez
    • Fahri Küçükali
    • Jean-Charles Lambert
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 412-436
  • Some patients with HIV-associated tuberculosis develop an immune reconstitution inflammatory syndrome (TB-IRIS) in response to antiretroviral therapy. Here the authors identify genes differentially expressed in patients likely to progress to TB-IRIS and find activation of Toll-like receptor and inflammasome pathways.

    • Rachel P. J. Lai
    • Graeme Meintjes
    • Robert J. Wilkinson
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-11
  • Using single-nucleus RNA sequencing from 32 donors, researchers identified distinct astrocytic gene expression programs activated across brain regions and Alzheimer’s disease stages. They also found unique subclusters of astrocytes that appear to vary over time, highlighting the complexity of astrocytic responses in AD.

    • Alberto Serrano-Pozo
    • Huan Li
    • Sudeshna Das
    ResearchOpen Access
    Nature Neuroscience
    Volume: 27, P: 2384-2400
  • Volitional reward taking emerges through a sequence of preluding events. Yet, the underlying neural mechanism is not fully understood. Here authors show a series of temporal dynamics of nucleus accumbens neurons that may substantiate such preluding events to commit “free-willed” animals to reward taking.

    • Terra A. Schall
    • King-Lun Li
    • Yan Dong
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Wendrich, Gallant and colleagues find that USP53 and USP54 are active deubiquitinases, with USP53 removing ubiquitin chains from substrate proteins in a chain-linkage-directed manner, and provide biochemical and structural insights into their mechanism, cellular substrates and disease implications.

    • Kim Wendrich
    • Kai Gallant
    • Malte Gersch
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 21, P: 746-757
  • The use of harmful solvents to fabricate stable devices hampers the commercialization of perovskite solar cells. Here, the authors introduce a biorenewable solvent system and precursor-phase engineering to realize stable formamidinium lead triiodide-based solar cells.

    • Benjamin M. Gallant
    • Philippe Holzhey
    • Henry J. Snaith
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Metabolite extraction with organic solvents is assumed to remove/denature proteins. Here, the authors uncover a vast landscape of >1,000 proteins in metabolite extracts. These proteins can retain catalytic activity and drive post-extraction metabolite changes, obscuring biological interpretation.

    • Rachel (Rae) J. House
    • Molly T. Soper-Hopper
    • Ryan D. Sheldon
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • De Palma and colleagues develop a dendritic cell therapy based on dendritic cell progenitors engineered to produce IL-12 and FLT3L and show antigen-agnostic reduction of tumor burden that can be exploited for combination therapy in glioma.

    • Ali Ghasemi
    • Amaia Martinez-Usatorre
    • Michele De Palma
    ResearchOpen Access
    Nature Cancer
    Volume: 5, P: 240-261
  • A computational approach to generate reference-free protein families from the sequence space in metagenomes reveals an enormously diverse functional space.

    • Georgios A. Pavlopoulos
    • Fotis A. Baltoumas
    • Nikos C. Kyrpides
    ResearchOpen Access
    Nature
    Volume: 622, P: 594-602
  • The US COVID-19 Scenario Modeling Hub produced medium to long term projections based on different epidemic scenarios. In this study, the authors evaluate 14 rounds of projections by comparing them to the epidemic trajectories that occurred, and discuss lessons learned for future similar projects.

    • Emily Howerton
    • Lucie Contamin
    • Justin Lessler
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • The neural mechanisms underlying ketamine-induced altered states of consciousness are not well understood. Here, the authors show that depersonalization and dissociative amnesia related to ketamine have opposing effects on the activity of the right anterior insula in response to social threat.

    • Laura M. Hack
    • Xue Zhang
    • Leanne M. Williams
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • Comprehensive integration of gene expression with epigenetic features is needed to understand the transition of kidney cells from health to injury. Here, the authors integrate dual single nucleus RNA expression and chromatin accessibility, DNA methylation, and histone modifications to decipher the chromatin landscape of the kidney in reference and adaptive injury cell states, identifying a transcription factor network of ELF3, KLF6, and KLF10 which regulates adaptive repair and maladaptive failed repair.

    • Debora L. Gisch
    • Michelle Brennan
    • Michael T. Eadon
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Independent impact evaluations of voluntary REDD+ projects to protect forests are needed to provide evidence of their effects. This study evaluates the impacts of a large voluntary REDD+ project in Sierra Leone and finds evidence of slowing deforestation with no socioeconomic harm to local people.

    • Mandy Malan
    • Rachel Carmenta
    • Maarten Voors
    ResearchOpen Access
    Nature Sustainability
    Volume: 7, P: 120-129
  • Measures to protect marine habitats must consider the interlinkages between conservation policies and food systems. This study illustrates how a new protected area in Palau may shift fish supply and tourist consumption, highlighting policies to avoid negative environmental consequences.

    • Staci A. Lewis
    • Carlo Fezzi
    • Kirsten L. L. Oleson
    Research
    Nature Food
    Volume: 1, P: 783-786
  • Acid-sensing ion channels (ASICs) sense changes in extracellular acidity with Ca2+ as an allosteric modulator and channel blocker. Here authors use electrophysiology and molecular dynamics simulation to identify the residue in ASIC3 which modulates proton sensitivity and contributes to the Ca2+ block.

    • Zhicheng Zuo
    • Rachel N. Smith
    • Eric B. Gonzales
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • Vascular endothelial cell (EC) dysfunction contributes to the occurrence of diabetic complications. Here the authors report that in diabetic conditions, upregulation of the RNA binding protein QKI-7 in ECs due to the imbalance of RNA splicing factors CUG-BP and hnRNPM contributes to EC dysfunction, and that in vivo QKI-7 silencing improves blood flow recovery in diabetic mice with limb ischemia.

    • Chunbo Yang
    • Magdalini Eleftheriadou
    • Andriana Margariti
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • A study demonstrates that plasticity in the head direction system in Drosophila is modulated by dopamine, which increases learning when reorienting movements are bringing in new spatial information.

    • Yvette E. Fisher
    • Michael Marquis
    • Rachel I. Wilson
    ResearchOpen Access
    Nature
    Volume: 612, P: 316-322
  • The ability to control nanostructure shape and dimensions presents opportunities to design materials in which their macroscopic properties are dependent upon the nature of the nanoparticle. Here the authors show nanoparticle shape is a critical consideration in the determination of nanocomposite hydrogel properties.

    • Maria C. Arno
    • Maria Inam
    • Rachel K. O’Reilly
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-9
  • We know little about the relative contributions of visual and olfactory senses for wild, frugivorous mammals. Here, the authors show that in capuchin monkeys, frequency of olfactory evaluation of fruits is higher when scent production increases with ripening, and among monkeys with red-green colorblindness.

    • Amanda D. Melin
    • Omer Nevo
    • Shoji Kawamura
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-9
    • Rachel David
    News
    Nature Reviews Molecular Cell Biology
    Volume: 13, P: 751
  • Here, the authors demonstrate that cortical microstructure in young adults shows marked sex bias, which is most pronounced in paralimbic areas. The effects are put into context with variations in sex hormones and local cytoarchitecture.

    • Svenja Küchenhoff
    • Şeyma Bayrak
    • Sofie L. Valk
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-19
  • Kodali, Proietti et al. report that increased numbers of P-bodies in leukaemia cells account for sequestration and prevention of tumour-suppressive mRNAs from being translated, which could be targeted as a potential intervention in myeloid leukaemia.

    • Srikanth Kodali
    • Ludovica Proietti
    • Bruno Di Stefano
    Research
    Nature Cell Biology
    Volume: 26, P: 1745-1758
  • A review of allergic host defences argues that allergic immunity has an important role in host defence against noxious environmental substances.

    • Noah W. Palm
    • Rachel K. Rosenstein
    • Ruslan Medzhitov
    Reviews
    Nature
    Volume: 484, P: 465-472
  • Only praziquantel is available for treating schistosomiasis, a disease affecting >200 million people. Here, the authors identify compounds active against schistosome infections meeting the criteria for lead progression indicated by WHO with better activity against juvenile worms than praziquantel.

    • Valentina Z. Petukhova
    • Sammy Y. Aboagye
    • Pavel A. Petukhov
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-19
  • There is interest in measuring the influence of spatial cellular organization on pathophysiology, which is being accomplished through spatial transcriptomics. There the authors present UniCell Deconvolve, a pre-trained deep learning model that predicts cell identity and deconvolves cell type fractions using a 28 M cell database.

    • Daniel Charytonowicz
    • Rachel Brody
    • Robert Sebra
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-20
  • Harrington et al report their discovery of Nemacol, which is a small molecule inhibitor of the vesicular acetylcholine transporter (VAChT). VAChT loads synaptic vesicles with acetylcholine and is a key point of vulnerability in animals. Harrington et al show that Nemacol has nematode selectivity and potential utility against nematode parasites.

    • Sean Harrington
    • Jacob Pyche
    • Peter J. Roy
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-14
  • Infectious disease associated with excessive inflammation can result in coagulopathy. Here the authors show use of the clinically approved therapy dimethyl fumarate, as well as the pre-clinical tool compound 4- octyl itaconate, modulate tissue factor related coagulopathy via inhibition of the myeloid type I interferon pathway-tissue factor axis.

    • Tristram A. J. Ryan
    • Alexander Hooftman
    • Luke A. J. O’Neill
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • A probe for the ubiquitin-like protein Fubi led to the discovery of dual ubiquitin/Fubi C-terminal hydrolase activity in the deubiquitinase USP16 in addition to USP36, enabling structural characterization of this distinctive Ub/Ubl specificity, and revealed a synergistic role of USP16 in ribosomal protein maturation.

    • Rachel O’Dea
    • Nafizul Kazi
    • Malte Gersch
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 19, P: 1394-1405
  • Mammalian megafaunal biodiversity has declined since the Plio-Pleistocene. Here, the authors apply ecometric methods to evaluate the functional link between eastern African herbivorous megafauna and their environments, showing that some biodiversity loss coincided with community ecological function disturbance.

    • Daniel A. Lauer
    • A. Michelle Lawing
    • Jenny L. McGuire
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Phage-plasmids are bacterial extrachromosomal elements that act both as plasmids and as viruses. Here, Shan et al. show that segregational drift and loss-of-function mutations play key roles in the infection dynamics of a cosmopolitan phage-plasmid, allowing it to create continuous productive infections in marine bacteria.

    • Xiaoyu Shan
    • Rachel E. Szabo
    • Otto X. Cordero
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-10