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Showing 1–50 of 182 results
Advanced filters: Author: Stephanie Chase Clear advanced filters
  • Here, the authors demonstrate that CAND1 increases the dissociation rate of CRL2s, thus exerting an inhibitory effect, which in turn endows CRL2s with a selectivity for different targets based on their affinity for CRL2, thereby pacing protein degradation.

    • Kankan Wang
    • Stephanie Diaz
    • Xing Liu
    Research
    Nature Structural & Molecular Biology
    Volume: 31, P: 323-335
  • Learning to balance work, family, optimism and setbacks is a process for all early-career investigators. Stephanie Correa and Leng Han share their stories in this instalment of Career pathways.

    • Stephanie Correa
    • Leng Han
    Reviews
    Nature Metabolism
    Volume: 3, P: 446-448
  • Large-effect variants in autism remain elusive. Here, the authors use long-read sequencing to assemble phased genomes for 189 individuals, identifying pathogenic variants in TBL1XR1, MECP2, and SYNGAP1, plus nine candidate structural variants missed by short-read methods.

    • Yang Sui
    • Jiadong Lin
    • Evan E. Eichler
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-16
  • Zeng et al. show that TDP-43, known for repressing cryptic exon usage in frontotemporal dementia/amyotrophic lateral sclerosis, also controls alternative polyadenylation, impacting expression of disease-linked genes (SFPQ, NEFL and TMEM106B).

    • Yi Zeng
    • Anastasiia Lovchykova
    • Aaron D. Gitler
    ResearchOpen Access
    Nature Neuroscience
    Volume: 28, P: 2180-2189
  • In wildlife tagging, stress from capture and handling can alter post- release behavior and potentially study interpretations. This study of 42 mammal species shows that these effects diminish within 4–7 days, and quicker for animals in high human activity areas indicating adaptation to disturbance.

    • Jonas Stiegler
    • Cara A. Gallagher
    • Niels Blaum
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • Ahead of her 80th birthday, Judith Howard discussed her life in science, including the importance of women in crystallography from its inception, and her favourite breakthroughs in this field.

    • Judith Howard
    • Stephanie Greed
    Comments & Opinion
    Nature Reviews Chemistry
    Volume: 9, P: 730-731
  • Palmulli, Couty and colleagues show that the tetraspanin CD63 promotes accumulation of cholesterol in intraluminal vesicles (ILVs) at the expense of retrieval from endosomes; cholesterol stored in ILVs and exosomes is recovered in an NPC1-dependent manner.

    • Roberta Palmulli
    • Mickaël Couty
    • Guillaume van Niel
    Research
    Nature Cell Biology
    Volume: 26, P: 1093-1109
  • Protein-mediated transport is implicated in trafficking fatty acids at contact sites of lipid droplets and mitochondria. Here, the authors use proteomics to catalogue the proteins at this contact site and report a mechanism of fatty acid transfer that regulates fatty acid oxidation and lipid homeostasis.

    • Ayenachew Bezawork-Geleta
    • Camille J. Devereux
    • Matthew J. Watt
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-23
  • In the kidney, maintaining permeability of the filtration barrier is critical. Here, Sachs W. et al show that homeostasis of podocytes and glomerular endothelial cells relies on differing proteasome constitutions which orchestrate endocytic activity in addition to protein degradation.

    • Wiebke Sachs
    • Lukas Blume
    • Catherine Meyer-Schwesinger
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • The 4D Nucleome Project demonstrates the use of genomic assays and computational methods to measure genome folding and then predict genomic structure from DNA sequence, facilitating the discovery of potential effects of genetic variants, including variants associated with disease, on genome structure and function.

    • Job Dekker
    • Betul Akgol Oksuz
    • Feng Yue
    ResearchOpen Access
    Nature
    Volume: 649, P: 759-776
  • Targeting noncoding nucleic acids with small molecules represents an important and significant challenge in chemical biology and drug discovery. Here the authors characterize DC-34, a small molecule that exhibits selective binding to specific G4 structures, and provide a structural basis for its selectivity

    • David R. Calabrese
    • Xiang Chen
    • John S. Schneekloth Jr.
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-15
  • Itkin et al. identify a role for Fli-1 in hematopoietic stem cell activation during regenerative hematopoiesis. They show that Fli-1 coordinates hematopoietic stem cells to stimulate niche-derived Notch1 feedback signals for demand-needed hematopoietic cell output.

    • Tomer Itkin
    • Sean Houghton
    • Shahin Rafii
    Research
    Nature Immunology
    Volume: 26, P: 378-390
  • PTEN is a key cell signaling lipid phosphatase that is regulated by C-terminal phosphorylation. Biophysical methods were used to illuminate the structural basis for PTEN regulation, which involves a dynamic N-terminal helix that influences catalysis.

    • Daniel R. Dempsey
    • Thibault Viennet
    • Philip A. Cole
    Research
    Nature Structural & Molecular Biology
    Volume: 28, P: 858-868
  • The cellular mechanisms underlying autophagy are conserved; however it is unclear how they evolved in higher organisms. Here the authors identify two oxidation-sensitive cysteine residues in the autophagy receptor SQSTM1/p62 in vertebrates which allow activation of pro-survival autophagy in stress conditions.

    • Bernadette Carroll
    • Elsje G. Otten
    • Viktor I. Korolchuk
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • The BRAIN Initiative Cell Census Network has constructed a multimodal cell census and atlas of the mammalian primary motor cortex in a landmark effort towards understanding brain cell-type diversity, neural circuit organization and brain function.

    • Edward M. Callaway
    • Hong-Wei Dong
    • Susan Sunkin
    ResearchOpen Access
    Nature
    Volume: 598, P: 86-102
  • Similarities in cancers can be studied to interrogate their etiology. Here, the authors use genome-wide association study summary statistics from six cancer types based on 296,215 cases and 301,319 controls of European ancestry, showing that solid tumours arising from different tissues share a degree of common germline genetic basis.

    • Xia Jiang
    • Hilary K. Finucane
    • Sara Lindström
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-23
  • During mammary gland involution, the organ undergoes extensive remodeling. Here, the authors explore the role of mammary gland adipose tissue (mgWAT) in this process and demonstrate that adipocyte hypertrophy and lipid trafficking underlie mgWAT expansion and epithelial regression.

    • Rachel K. Zwick
    • Michael C. Rudolph
    • Valerie Horsley
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-17
  • STIM proteins sense Ca2+ depletion in the ER and activate store-operated Ca2+-entry (SOCE) in response, a process associated with dendritic cell functions. Here the authors show STIM1 is the major isoform controlling SOCE in mouse dendritic cells and provide a mechanism for its requirement in antigen cross-presentation.

    • Paula Nunes-Hasler
    • Sophia Maschalidi
    • Nicolas Demaurex
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-15
  • The nuclear pore complex (NPC) is known to regulate p53 signaling and this has mainly been linked to peripheral NPC subunits. Here the authors show that Nup155 from the NPC inner ring regulates the p53 pathway by controlling p21 translation while also being a target of p53-mediated repression.

    • Kerstin Holzer
    • Alessandro Ori
    • Stephan Singer
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-13
  • The hypoxia response pathway can counter pathological damage caused by low oxygen availability. Here the authors employ a multiomics approach to show how the pathway reprograms metabolism towards gluconeogenesis to combat oxidative stress.

    • Mehul Vora
    • Stephanie M. Pyonteck
    • Christopher Rongo
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-15
  • Cholinergic interneurons act at nicotinic receptors to depress dopamine release, interrupting its relationship to dopamine neuron firing and supporting an inverse scaling of dopamine release according to cholinergic activity.

    • Yan-Feng Zhang
    • Pengwei Luan
    • Stephanie J. Cragg
    ResearchOpen Access
    Nature Neuroscience
    Volume: 28, P: 783-794
  • Genome engineering in bacteria remains a complex multistep process. Here, the authors developed make-or-break Prime Editing, a precise method for genetic modification in Streptococcus pneumoniae that enables high-throughput and scalable genome editing.

    • Monica Rengifo-Gonzalez
    • Maria-Vittoria Mazzuoli
    • Jan-Willem Veening
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Pierre Guermonprez and colleagues have worked out how a subset of dendritic cells expands in individuals with severe malaria. Plasmodium infection causes an accumulation of xanthine in infected red blood cells. The researchers found that type I interferon triggers an increase in the enzyme that metabolizes xanthine to uric acid. Uric acid then acts on mast cells to release Flt3 ligand, an important regulator of dendritic cells, which in turn stimulate T cells to respond to the infection.

    • Pierre Guermonprez
    • Julie Helft
    • Michel C Nussenzweig
    Research
    Nature Medicine
    Volume: 19, P: 730-738
  • Ahead of his 60th birthday, Omar Yaghi discussed his life in science so far and where he believes is the exciting space for future developments.

    • Stephanie Greed
    • Omar M. Yaghi
    Comments & Opinion
    Nature Reviews Chemistry
    Volume: 9, P: 135-137
  • The impact of cisplatin-based chemotherapy on tumor genomes is complex. Here, the authors study matched pre- and post-chemotherapy primary samples in muscle-invasive bladder cancer, finding a cisplatin-based mutational signature, and highlighting the impact of intratumor heterogeneity on survival.

    • David Liu
    • Philip Abbosh
    • Eliezer M. Van Allen
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-11
  • A bifunctional AURORA-A degrader induces the fast and specific degradation of this kinase in cancer cell lines, which enables targeting of non-catalytic, oncogenic functions of AURORA-A resulting in S-phase arrest and rampant apoptosis.

    • Bikash Adhikari
    • Jelena Bozilovic
    • Elmar Wolf
    Research
    Nature Chemical Biology
    Volume: 16, P: 1179-1188
  • Environmental analyses predict extensive, yet to be realized natural product diversity. Herein, the authors report an approach that directly captures natural products from the environment, circumventing previous challenges and yielding compounds with unusual structures and activities.

    • Alexander Bogdanov
    • Mariam N. Salib
    • Paul R. Jensen
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Deregulated Wnt pathway activity has been implicated in many cancers, making this pathway an attractive target for anticancer therapies. Here, a small molecule inhibitor of the Wnt pathway is identified and its direct target and mechanism of action are characterized, providing new insights into the physiological regulation of the Wnt pathway and new possibilities for targeted Wnt pathway therapeutics.

    • Shih-Min A. Huang
    • Yuji M. Mishina
    • Feng Cong
    Research
    Nature
    Volume: 461, P: 614-620
  • Plant cells maintain strict proton gradients over different membranes. Here, Dejonghe et al. show that several protonophores, including the known tyrosine kinase inhibitor TyrphostinA23, inhibit clathrin-mediated endocytosis by disturbing these gradients and causing cytoplasmic acidification.

    • Wim Dejonghe
    • Sabine Kuenen
    • Eugenia Russinova
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-12
  • The receptor tyrosine kinase c-Met continues to signal following its internalization, recruiting the small GTPase Rac to stimulate cell migration. Ménard et al.show that this Rac signalling results in distinct outcomes depending on the nature of the endosome in which the receptor resides.

    • Ludovic Ménard
    • Peter J. Parker
    • Stéphanie Kermorgant
    Research
    Nature Communications
    Volume: 5, P: 1-14
  • Virus attenuation is used to obtain vaccine strains. Here, the rapid evolution of RNA viruses is exploited by engineering their genomes to encode sites that are a mutation away from a stop codon, a clever method to generate attenuated viruses.

    • Gonzalo Moratorio
    • Rasmus Henningsson
    • Marco Vignuzzi
    Research
    Nature Microbiology
    Volume: 2, P: 1-12
  • Glaucoma is the most common cause of irreversible blindness worldwide. Here, the authors carry out a large meta-analysis of genetic data from individuals of European and Asian ancestry and identify 10 new loci associated with vertical cup-disc ratio, a key factor in the clinical assessment of patients with glaucoma.

    • Henriët. Springelkamp
    • René Höhn
    • Christopher J. Hammond
    ResearchOpen Access
    Nature Communications
    Volume: 5, P: 1-7
  • Sexual dimorphism in genetic vulnerability to schizophrenia, systemic lupus erythematosus and Sjögren’s syndrome is linked to differential protein abundance from alleles of complement component 4.

    • Nolan Kamitaki
    • Aswin Sekar
    • Steven A. McCarroll
    Research
    Nature
    Volume: 582, P: 577-581
  • Electrocatalysis offers a route to improving the treatment of wastewater, yet the need for supporting electrolytes complicates the purification of products. Here a cell is designed based on a porous solid electrolyte layer with a cation shuttling strategy that allows direct conversion of nitrate-containing wastewater into NH3(g) and purified water.

    • Feng-Yang Chen
    • Ahmad Elgazzar
    • Haotian Wang
    Research
    Nature Catalysis
    Volume: 7, P: 1032-1043
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17