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Showing 501–550 of 1495 results
Advanced filters: Author: WILLIAM E. HOWARD Clear advanced filters
  • The authors use TetTag pharmacogenetics to mark neuronal ensembles activated in the preoptic hypothalamus during dexmedeotomidine-induced sedation or recovery sleep. When these ensembles were selectively reactivated, NREM sleep and the accompanying drop in body temperature were recapitulated. Thus α2 adrenergic receptor–induced sedation and recovery sleep share circuitry sufficient for producing these states.

    • Zhe Zhang
    • Valentina Ferretti
    • Nicholas P Franks
    Research
    Nature Neuroscience
    Volume: 18, P: 553-561
  • Using cryo-EM, the authors elucidate the mechanisms of TRPV1 regulation by bioactive lipids, namely phosphoinositides and the inflammatory lipid lysophosphatidic acid.

    • William R. Arnold
    • Adamo Mancino
    • Yifan Cheng
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 31, P: 1377-1385
  • An in vitro human tonsil tissue-based system captures key features of a functional germinal center and can be used to study humoral immune responses to vaccines, new antigens and adjuvants.

    • Lisa E. Wagar
    • Ameen Salahudeen
    • Mark M. Davis
    Research
    Nature Medicine
    Volume: 27, P: 125-135
  • Cheryl Winkler and colleagues use admixture mapping to identify risk variants in MYH9 associated with focal segmental glomerulosclerosis and end-stage renal disease in African Americans. The risk variants are more common in populations with West African ancestry and contribute to the excess burden of end-stage kidney diseases in these populations. A similar finding is reported in an accompanying paper by Linda Kao and colleagues.

    • Jeffrey B Kopp
    • Michael W Smith
    • Cheryl A Winkler
    Research
    Nature Genetics
    Volume: 40, P: 1175-1184
  • The combination of the brain-permeable mTOR inhibitor RapaLink-1 and the brain-impermeable FKBP12 ligand RapaBlock enable brain-specific inhibition of mTOR.

    • Ziyang Zhang
    • Qiwen Fan
    • Kevan M. Shokat
    ResearchOpen Access
    Nature
    Volume: 609, P: 822-828
  • In value-based decision-making, single prefrontal neurons represent multiple variables at different times in the decision process. Here, the authors show these representations to be separable and stable at the population level, allowing read out of specific variables at behaviorally relevant times.

    • Daniel L. Kimmel
    • Gamaleldin F. Elsayed
    • William T. Newsome
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-19
  • Cellular heterogeneity in cancer is complex and difficult to study. Here, the authors introduce Protein-indexed Assay of Transposase Accessible Chromatin (Pi-ATAC), which combines single cell chromatin and proteomic profiling to provide deep insight into the tumor microenvironment, and reveal the role of hypoxia in shaping the regulome of a subset of breast cancer cells in vivo.

    • Xingqi Chen
    • Ulrike M. Litzenburger
    • Howard Y. Chang
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-12
  • Protein antigens, such as HIV envelope protein, require adjuvants for high immunogenicity. Here the authors show that a combined adjuvant approach with slow antigen delivery and potent ISCOMs adjuvant primes robust germinal center activity and humoral immunity in non-human primates. pSer-modified antigen shifts immunodominance to allow subdominant epitope-targeting of rare B cells.

    • Ivy Phung
    • Kristen A. Rodrigues
    • Shane Crotty
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • The ability of the DEAD-box RNA helicase DDX5 to interact with master transcription factor RORγt is dependent on binding of the long noncoding RNA Rmrp; the DDX5–RORγt complex coordinates transcription of selective TH17 genes and is required for the pathogenicity of TH17 cells.

    • Wendy Huang
    • Benjamin Thomas
    • Dan R. Littman
    Research
    Nature
    Volume: 528, P: 517-522
  • Duncan and colleagues link specific human brain cell types to schizophrenia and other complex brain phenotypes, providing mechanistic insights and a cellular taxonomy for psychiatric disorders.

    • Laramie E. Duncan
    • Tayden Li
    • William J. Giardino
    ResearchOpen Access
    Nature Neuroscience
    Volume: 28, P: 248-258
  • The authors measured the variability of neuronal responses across a large number of datasets and cortical areas. They found that variability decreased in response to all stimuli tested, whether the animal was awake, behaving or anesthetized, suggesting that the stabilization of cortex in response to an input is a general cortical property.

    • Mark M Churchland
    • Byron M Yu
    • Krishna V Shenoy
    Research
    Nature Neuroscience
    Volume: 13, P: 369-378
  • The induction of broadly neutralizing antibodies (bNAbs) is a goal of HIV-1 vaccine research. Here the authors demonstrate the ability of an HIV Env-derived immunogen to bind germline precursors of a class of bNAbs and to activate the corresponding B cells in a knock-in mouse model

    • Andrew T. McGuire
    • Matthew D. Gray
    • Leonidas Stamatatos
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-10
  • Identifying therapeutic targets in rare cancers is challenging due to the lack of relevant pre-clinical models. Here, the authors generate a cancer cell line from a paediatric patient with a rare undifferentiated sarcoma and through functional genomics and chemical screens identified CDK4 and XPO1 as potential therapeutic targets in this cancer.

    • Andrew L. Hong
    • Yuen-Yi Tseng
    • Jesse S. Boehm
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-9
  • A pediatric cancer dependency map generated with genome-scale CRISPR–Cas9 loss-of-function screens in 82 pediatric cancer cell lines highlights genetic dependencies across a range of tumor types.

    • Neekesh V. Dharia
    • Guillaume Kugener
    • Kimberly Stegmaier
    Research
    Nature Genetics
    Volume: 53, P: 529-538
  • In April 2021, Eli Lilly voluntarily asked the FDA to revoke the Emergency Use Authorization for the monoclonal antibody bamlanivimab due to reduced susceptibility in vitro to SARS-CoV-2 variants, not for safety. In this work, authors carry out a placebo-controlled phase 2 evaluation of bamlanivimab in non-hospitalized adults with COVID-19, to determine safety and efficacy.

    • Kara W. Chew
    • Carlee Moser
    • Davey M. Smith
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Endocrinologists have traditionally focused on studying one hormone or organ system at a time. Here the authors use transcriptomic data from the mouse lemur to globally characterize primate hormonal signaling, describing hormone sources and targets, identifying conserved and primate specific regulation, and elucidating principles of the network.

    • Shixuan Liu
    • Camille Ezran
    • James E. Ferrell Jr.
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-27
  • Results for the final phase of the 1000 Genomes Project are presented including whole-genome sequencing, targeted exome sequencing, and genotyping on high-density SNP arrays for 2,504 individuals across 26 populations, providing a global reference data set to support biomedical genetics.

    • Adam Auton
    • Gonçalo R. Abecasis
    • Gonçalo R. Abecasis
    ResearchOpen Access
    Nature
    Volume: 526, P: 68-74
  • The process of protein crystallization is poorly understood and difficult to program through the primary sequence. Here the authors develop a computational approach to designing three-dimensional protein crystals with prespecified lattice architectures with high accuracy.

    • Zhe Li
    • Shunzhi Wang
    • David Baker
    Research
    Nature Materials
    Volume: 22, P: 1556-1563
  • This overview of the ENCODE project outlines the data accumulated so far, revealing that 80% of the human genome now has at least one biochemical function assigned to it; the newly identified functional elements should aid the interpretation of results of genome-wide association studies, as many correspond to sites of association with human disease.

    • Ian Dunham
    • Anshul Kundaje
    • Ewan Birney
    ResearchOpen Access
    Nature
    Volume: 489, P: 57-74
  • Analysis of ancient proteins suggests that Early Bronze Age dairying and horse domestication catalysed eastern Yamnaya migrations.

    • Shevan Wilkin
    • Alicia Ventresca Miller
    • Nicole Boivin
    ResearchOpen Access
    Nature
    Volume: 598, P: 629-633
  • Savini et al. report that lysosomal lipolysis in peripheral adipose depots produces polyunsaturated fatty acids (PUFAs). PUFAs and the lipid chaperone LBP-3 induce a nuclear hormone receptor, neuropeptide-mediated cascade in neurons to extend lifespan.

    • Marzia Savini
    • Andrew Folick
    • Meng C. Wang
    ResearchOpen Access
    Nature Cell Biology
    Volume: 24, P: 906-916
  • The radial-velocity technique could detect a small gas giant orbiting a binary star and determine its mass: 65.2 ± 11.8 Earth masses. The system also hosts a smaller inner planet, making it one of the few known multiplanetary circumbinary systems.

    • Matthew R. Standing
    • Lalitha Sairam
    • William F. Welsh
    Research
    Nature Astronomy
    Volume: 7, P: 702-714
  • COVID-19 can be associated with neurological complications. Here the authors show that markers of brain injury, but not immune markers, are elevated in the blood of patients with COVID-19 both early and months after SARS-CoV-2 infection, particularly in those with brain dysfunction or neurological diagnoses.

    • Benedict D. Michael
    • Cordelia Dunai
    • David K. Menon
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Stig Bojesen, Georgia Chenevix-Trench, Alison Dunning and colleagues report common variants at the TERT-CLPTM1L locus associated with mean telomere length measured in whole blood. They also identify associations at this locus to breast or ovarian cancer susceptibility and report functional studies in breast and ovarian cancer tissue and cell lines.

    • Stig E Bojesen
    • Karen A Pooley
    • Alison M Dunning
    Research
    Nature Genetics
    Volume: 45, P: 371-384
    • PAUL W. SYKES jun.
    • WILLIAM B. ROBERTSON jun.
    Correspondence
    Nature
    Volume: 220, P: 939-940
  • The small molecule Nobiletin enhances circadian rhythms and protects against obesity-associated metabolic dysfunction in mice. Here the authors test its effect on health and lifespan, reporting that circadian enhancement promotes fitness and healthy aging in metabolically challenged mice.

    • Kazunari Nohara
    • Venkata Mallampalli
    • Zheng Chen
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-15
  • The plant growth hormone auxin is involved in hypocotyl elongation in response to shade and high temperatures. The vas3 mutant now shows that local auxin conjugation is as important for controlling hormone homeostasis as biosynthesis and transport.

    • Zuyu Zheng
    • Yongxia Guo
    • Joanne Chory
    Research
    Nature Plants
    Volume: 2, P: 1-9
  • In geographic atrophy, a type of macular degeneration, retinal pigmented epithelium (RPE) cells die. This paper finds that DICER1, which processes miRNA precursors, is reduced in RPE from individuals with geographic atrophy. Cell death is not due to loss of miRNA processing, however; rather, the absence of DICER1 allows accumulation of pathological Alu repeat sequence RNAs. This work reveals a novel function of Dicer in degrading Alu RNAs.

    • Hiroki Kaneko
    • Sami Dridi
    • Jayakrishna Ambati
    Research
    Nature
    Volume: 471, P: 325-330
  • Trajectory-coding neurons in the hippocampus convey important information for performing memory tasks. Here, Kinsky et al. track long-term neural activity in the hippocampus to find that trajectory-coding emerges rapidly and remains stable across long time-scales.

    • Nathaniel R. Kinsky
    • William Mau
    • Michael E. Hasselmo
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • High-coverage, ultra-long-read nanopore sequencing is used to create a new human genome assembly that improves on the coverage and accuracy of the current reference (GRCh38) and includes the gap-free, telomere-to-telomere sequence of the X chromosome.

    • Karen H. Miga
    • Sergey Koren
    • Adam M. Phillippy
    ResearchOpen Access
    Nature
    Volume: 585, P: 79-84
  • LncRNA loci potentially contain multiple modes that can exert function, including DNA regulatory elements. Here, the authors generated genetic models in mice to dissect the role of the syntenically conserved lncRNA Firre in the context of hematopoiesis.

    • Jordan P. Lewandowski
    • James C. Lee
    • John L. Rinn
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-13
  • The Cancer Genome Atlas Research Network reports an integrative analysis of more than 400 samples of clear cell renal cell carcinoma based on genomic, DNA methylation, RNA and proteomic characterisation; frequent mutations were identified in the PI(3)K/AKT pathway, suggesting this pathway might be a potential therapeutic target, among the findings is also a demonstration of metabolic remodelling which correlates with tumour stage and severity.

    • Chad J. Creighton
    • Margaret Morgan
    • Heidi J. Sofia.
    ResearchOpen Access
    Nature
    Volume: 499, P: 43-49
  • Mouse models of lung and colorectal cancer with sporadic DNA mismatch repair deficiency clarify that the intratumor heterogeneity and clonal architecture rather than tumor mutational burden are powerful determinants of immunotherapy response.

    • Peter M. K. Westcott
    • Francesc Muyas
    • Tyler Jacks
    ResearchOpen Access
    Nature Genetics
    Volume: 55, P: 1686-1695
  • Computational methods for the de novo design of conformationally restricted peptides produce exceptionally stable short peptides stabilized by backbone cyclization and/or internal disulfide bonds that are promising starting points for a new generation of peptide-based drugs.

    • Gaurav Bhardwaj
    • Vikram Khipple Mulligan
    • David Baker
    Research
    Nature
    Volume: 538, P: 329-335
  • During the initiation of bacterial DNA replication, loader proteins transfer the hexameric helicase ring onto replication origin DNA. Liu et al.report the crystal structure of a 570-kDa prepriming complex and suggest that the release of loader proteins is associated with the transition of the helicase ring to a spiral configuration.

    • Bin Liu
    • William K. Eliason
    • Thomas A. Steitz
    ResearchOpen Access
    Nature Communications
    Volume: 4, P: 1-8