Table 4 Identification of Z-linked markers in B. mori Whole Genome Shotgun (WGS) sequence contigs (BLAST results as on Feb 15, 2005)
Marker accession no. | Markers | WGS contig | Homology (% Identity, Bit score, and E-value) | Genes and provisional function (accession no.) | Species |
|---|---|---|---|---|---|
OPU-14.920 | BAAB01127123∣contig52248 | 96%/33 aa, 67.0, 1e-09 | AP-1γ (FBgn0030089) | D. melanogaster | |
BAAB01021218∣contig147849 | No homology | ||||
OPR-09.1105 | BAAB01048734∣contig21903 | 45%/68 aa, 74.3, 3e-11 | CG11851, mannosyltransferase activity | D. melanogaster | |
OPG-06.1254 | BAAB01209182∣contig91100 | 51%/199 aa, 198, 6e-49 | ENSANGP00000020972 (XM_315297), unknown function | A. gambiae | |
BAAB01116160∣contig498223 | No homology | ||||
OPT-04.992 | BAAB01106426∣contig476977_483697 | 33%/941 aa, 520, e-145 | Reverse transcriptase Osvaldo retrotransposon (CAB39733.1) | D. buzzatii | |
OPF-02.1240 | gbAADK01008490.1 | No homology | |||
OPT-14.583 | BAAB01017829∣contig1401 | 92%/237nt, 319, 6e-83 | Non-LTR retrotransposon and Bm1 retroposon | B. mori | |
Bmsat208 | BAAB01155602.1 | 100%/136nt, 165,4e-38 | Bombyx mori Bmtitin1, Bmtitin2, Bmmiple, Bmsyx6, BmPM-Scl, Bmtkz, BmubcD4 genes, partial and complete cds (dbjAB090308.2) | B. mori | |
TA(CAG)4 | gbAADK01006369.1 | No homology | |||
Bmsat95 | gbAADK01032857.1 | No homology |
