Table 3 Association results for six selected SNPs were evaluated in two cohorts (CORGI and VQ58) in an external GWAS, either by checking the original variant or a proxy SNP highly correlated with it (r2>0.7).

From: A two-phase case–control study for colorectal cancer genetic susceptibility: candidate genes from chromosomal regions 9q22 and 3q22

 

Present in I5?

Present in I3?

Proxy

r 2 and D′

P (CORGI)

P (VQ58)

rs1444601

Yes

Yes

—

  

0.2653

0.7039

rs13088006

No

No

rs6769437

0.818

1.000

0.5816

0.4101

rs939453

No

No

rs7631734

0.869

0.964

0.7984

0.2922

rs1131597

No

No

rs7616492

0.762

1.000

0.1273

0.9246

rs10934954

No

No

rs2200368

1.000

1.000

0.6710

0.0899

rs2071387

Yes

Yes

—

  

0.7243

0.8671

  1. Abbreviations: GWAS=genome-wide association study; SNP=single-nucleotide polymorphism; I5=Illumina HumanHap550; I3=Illumina HumanHap300 (Illumina, San Diego, CA, USA).
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