Table 1 Comparison of the coverage of the design target between the three exome sets

From: The GENCODE exome: sequencing the complete human exome

 

Nimblegen CCDS a

Agilent CCDS b

GENCODE exome

No. of bait regions

197 218

316 000

406 539

Genome coverage (Mb)

34.1

37.6

47.9c (35.2)d

ECRs covered (%)

150529 (72.7)

164225 (79.3)

205031 (99.0)

Transcripts covered (%)

66828 (81.0)

71279 (86.4)

81204 (98.4)

Genes covered (%)

28203 (76.5)

30030 (81.5)

35989 (97.7)

  1. aNimbleGen Sequence Capture 2.1M Human Exome Array.
  2. bAgilent SureSelect Human All Exon Kit.
  3. cTotal length of bait regions including flanking regions.
  4. dTheoretical length without flanking regions.
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