Summary
Genome sizes and single copy complexity values have been estimated for eight Atriplex species and spinach by analysis of DNA reassociation kinetics. These values, together with measurements of interspecific hybridization carried out with purified single copy tracers, have been used to estimate the absolute amount of single copy DNA which is composed of homologous sequences in various species. The data show a large variation in cross reactivity for different species pairs which is best explained by postulating that these genomes were subject to extensive deletion during evolution of different lineages. At most, only about 5 × 107 nucleotide pairs of single copy DNA (about 10 times the amount in an E. coli genome) appear to be necessary to specify phenotypic features common to Atriplex species.
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Angerer, R C, Davidson, E H, and Britten, R J. 1976. Single copy DNA and structural gene sequence relationships among four sea urchin species. Chromosoma, 56, 213–226.
Bachmann, K, Goin, O B, and Goin, C J. 1972. Nuclear DNA amounts in vertebrates. Brookhaien Symp in Biol, 23, 419–450.
Belford, H S, and Thompson, W F. 1977. Single copy DNA sequence comparisons in Atriplex. Carnegie Inst Wash Year Book, 76, 246–252.
Belford, H S, and Thompson, W F. 1980. Single copy DNA homologies in Atriplex. II. Hybrid thermal stabilities and molecular phylogeny. Heredity, 46.
Bennett, M D. 1972. Nuclear DNA and minimum generation time in herbaceous plants. Proc Royal Society London, B, 181, 109–135.
Bennett, M D, and Smith, J B. 1976. Nuclear DNA amounts in angiosperme. Philos Trans R Soc London, Ser. B, 274, 227–273.
Björkman, O, Troughton, J, and Nobs, M A. 1973. Photosynthesis in relation to leaf structure. Brookhaven Symp in Biology, 25, 206–226.
Bonner, T I, Brenner, D J, Neufeld, B R, and Britten, R J. 1973. Reduction in the rate of DNA reassociation by sequence divergence. J Mol Biol, 81, 122–135.
Britten, R J. 1968. The arithmetic of nucleic acid reassociation. Carnegie Inst Wash Yearbook, 67, 332–335.
Britten, R J, Graham, D E, and Neufeld, B R. 1974. Analysis of repeating DNA sequences by reassociation. Methods in Enzymology, 29, 363–418.
Britten, R J, and Kohne, D E. 1968. Repeated sequences in DNA. Science, 161, 529–540.
Cairns, J. 1963. The chromosome of E. coli. Cold Spr Harb Quant Biol, 28, 43–46.
Cavalier-Smith, T. 1978. Nuclear volume control by nucleoskeletal DNA, selection for cell volume and cell growth rate, and the solution of the C-value paradox. J Cell Sci, 34, 247–278.
Flavell, R B, Bennett, M D, Smith, J B, and Smith, D B. 1974. Genome size and the proportion of repeated nucleotide sequence DNA in plants. Biochem Genetics, 12, 257–269.
Galau, G A, Chamberlin, M E, Hough, B R, Britten, R J, and Davidson, E H. 1976. Evolution of repetitive and nonrepetitive DNA. In:. Molecular Evolution, ed. Ayala, F. J., pp. 200–224. Sinauer Assoc, Inc. Sunderland, Mass.
Hall, H M, and Cléments, F E. 1923. The genus Atriplex. In The North American Species of Artemisia, Crysothamnus, and Atriplex Carnegie Inst, of Wash Publ 326, pp. 235–347. Judd and Detweiler, Inc., Washington, D.C.
Harpold, M M, and Craig, S P. 1978. The evolution of nonrepetitive DNA in sea urchins. Differentiation, 10, 7–11.
Hinegardner, R. 1976. Evolution of genome size. In. Molecular Evolution. Ed. Ayala, F. J., pp. 179–199. Sinauer Assoc, Inc., Sunderland, Mass.
Kiper, M, and Herzfeld, F. 1978. DNA sequence organization in the genome of Petroselium sativum (Umbelliferae). Chromosoma, 65, 335–351.
Kohne, D E. 1970. Evolution of higher organism DNA. Quart Rev Biophysics, 33, 327–375.
Laird, C, McConaughy, B L, and McCarthy, B J. 1969. Rate of fixation of nucleotide substitution in evolution. Nature, 224, 149–154.
Lee, A S, and Sinsheimer, R L. 1974. A. Cleavage map of bacteriophage Ø×174 genome. Proc Nat Acad Sci USA, 71, 2882–2886.
McDonnell, M W, Simon, M N, and Studier, E W. 1977. Analysis of restriction fragments of T7 DNA and determination of molecular weight by electrophoresis in neutral and alkaline gels. J Mol Biol, 110, 119–146.
Mizuno, S, and MacGregor, H C. 1974. Chromosomes, DNA sequences, and evolution in salamanders of the genus Plethodon. Chromosoma, 48, 239–296.
Murray, J G, Belford, H S, and Thompson, W F. 1977. In vitro labelling of single-stranded DNA. Carnegie Inst Wash Yearbook, 76, 262–267.
Murray, M G, Cuellar, R E, and Thompson, W F. 1978. DNA sequence organization in the pea genome. Biochemistry, 17, 5781–5790.
Murray, M G, Palmer, J D, Cueller, R E, and Thompson, W F. 1979. Deoxyribonucleic acid sequence organization in the mung bean genome. Biochemistry, 18, 5259–5266.
Murray, M G, Peters, D L, and Thompson, W F. 1981. Ancient repeated sequences in the pea and mung bean genomes and a model for genome evolution. J Mol Evol (in press).
Murray, M G, and Thompson, W F. 1977a. Contaminants affecting plant DNA reassociation. Carnegie Inst Wash Yearbook, 76, 255–259.
Murray, M G, and Thompson, W F. 1977b. Single-stranded DNA fragment length determination by alkaline agarose electrophoresis: Applications for DNA renaturation studies. Carnegie Inst Wash Yearbook, 76, 259–267.
Narayan, R K J, and Rees, H. 1977. Nuclear DNA divergence among Lathyrus species. Chromosoma, 63, 101–107.
Nobs, M A. 1976. Hybridization in Atriplex. Carnegie Inst Wash Yearbook, 75, 421–423.
Pearson, W R, Davidson, E H, and Britten, R J. 1977. A program for least squares analysis of reassociation and hybridization data. Nucleic Acids Research, 4, 1727–1735.
Rice, N. 1972. Changes in repeated DNA in evolution. Brookhaven Symp Biol, 23, 44–78.
Shields, G F, and Straus, N A. 1975. DNA-DNA hybridization studies of birds. Evolution, 29, 159–166.
Sibley, C G, and Ahlquist, J E. 1980. The relationships of the “primitive insect eaters” (Aves: Passeriformes) as indicated by DNA × DNA hybridization. Proc 17th International Ornithological Congress (in press).
Söhn, U-I, Rothfels, K H, and Straus, N A. 1975. DNA: DNA hybridization studies in black flies. J Mol Evol, 5, 75–85.
Sparrow, A H, Price, H J, and Underbrink, A G. 1972. A survey of DNA content per cell and per chromosome of prokaryotic and eukaryotic organisms: Some evolutionary considerations. Brookhaven Symp Biol, 23, 451–494.
Stein, D B, Thompson, W F, and Belford, H S. 1979. Studies on DNA sequences in the Osmundaceae. J Mol Evol, 13, 215–232.
Thompson, W F, and Murray, M G. 1980. Sequence organization in pea and mung bean DNA and a model for genome evolution. In The Plant Genome (Fourth John Innes Symposium), eds. Davies, D. R. and Hopwood, D. A. John Innes Charity, Norwich, England.
Wetmur, J G, and Davidson, N. 1968. Kinetics of renaturation of DNA. J Mol Biol, 31, 349–370.
Wilson, A C, Carlson, S S, and White, T J. 1977. Biochemical evolution. Ann Rev Biochem, 46, 573–639.
Zimmerman, J L, and Goldberg, R B. 1977. DNA sequence organization in the genome of Nicotiana tabacum. Chromosoma, 59, 227–252.
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This research was supported in part by NSF grant DEB76-83405 and funds from the Carnegie Institution of Washington. This paper is Publication No. 717 from the Department of Plant Biology, and is based on a portion of a dissertation submitted by H.S.B. in partial fulfilment of the Ph.D requirements in the Department of Botany, University of Massachusetts, Amherst.
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Belford, H., Thompson, W. Single copy DNA homologies in Atriplex. I. Cross reactivity estimates and the role of deletions in genome evolution. Heredity 46, 91–108 (1981). https://doi.org/10.1038/hdy.1981.9
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DOI: https://doi.org/10.1038/hdy.1981.9
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