Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

Heredity
  • View all journals
  • Search
  • Log in
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. heredity
  3. original article
  4. article
Single copy DNA homologies in Atriplex. I. Cross reactivity estimates and the role of deletions in genome evolution
Download PDF
Download PDF
  • Original Article
  • Published: 01 February 1981

Single copy DNA homologies in Atriplex. I. Cross reactivity estimates and the role of deletions in genome evolution

  • Heather S Belford1 nAff2 &
  • William F Thompson1 

Heredity volume 46, pages 91–108 (1981)Cite this article

  • 709 Accesses

  • 17 Citations

  • Metrics details

Summary

Genome sizes and single copy complexity values have been estimated for eight Atriplex species and spinach by analysis of DNA reassociation kinetics. These values, together with measurements of interspecific hybridization carried out with purified single copy tracers, have been used to estimate the absolute amount of single copy DNA which is composed of homologous sequences in various species. The data show a large variation in cross reactivity for different species pairs which is best explained by postulating that these genomes were subject to extensive deletion during evolution of different lineages. At most, only about 5 × 107 nucleotide pairs of single copy DNA (about 10 times the amount in an E. coli genome) appear to be necessary to specify phenotypic features common to Atriplex species.

Similar content being viewed by others

Signatures of copy number alterations in human cancer

Article Open access 15 June 2022

A breakage–replication/fusion process explains complex rearrangements and segmental DNA amplification

Article Open access 02 January 2026

Defining a core configuration for human centromeres during mitosis

Article Open access 01 December 2023

Article PDF

References

  • Angerer, R C, Davidson, E H, and Britten, R J. 1976. Single copy DNA and structural gene sequence relationships among four sea urchin species. Chromosoma, 56, 213–226.

    Article  CAS  PubMed  Google Scholar 

  • Bachmann, K, Goin, O B, and Goin, C J. 1972. Nuclear DNA amounts in vertebrates. Brookhaien Symp in Biol, 23, 419–450.

    CAS  Google Scholar 

  • Belford, H S, and Thompson, W F. 1977. Single copy DNA sequence comparisons in Atriplex. Carnegie Inst Wash Year Book, 76, 246–252.

    Google Scholar 

  • Belford, H S, and Thompson, W F. 1980. Single copy DNA homologies in Atriplex. II. Hybrid thermal stabilities and molecular phylogeny. Heredity, 46.

  • Bennett, M D. 1972. Nuclear DNA and minimum generation time in herbaceous plants. Proc Royal Society London, B, 181, 109–135.

    CAS  Google Scholar 

  • Bennett, M D, and Smith, J B. 1976. Nuclear DNA amounts in angiosperme. Philos Trans R Soc London, Ser. B, 274, 227–273.

    Article  CAS  Google Scholar 

  • Björkman, O, Troughton, J, and Nobs, M A. 1973. Photosynthesis in relation to leaf structure. Brookhaven Symp in Biology, 25, 206–226.

    Google Scholar 

  • Bonner, T I, Brenner, D J, Neufeld, B R, and Britten, R J. 1973. Reduction in the rate of DNA reassociation by sequence divergence. J Mol Biol, 81, 122–135.

    Article  Google Scholar 

  • Britten, R J. 1968. The arithmetic of nucleic acid reassociation. Carnegie Inst Wash Yearbook, 67, 332–335.

    Google Scholar 

  • Britten, R J, Graham, D E, and Neufeld, B R. 1974. Analysis of repeating DNA sequences by reassociation. Methods in Enzymology, 29, 363–418.

    Article  CAS  PubMed  Google Scholar 

  • Britten, R J, and Kohne, D E. 1968. Repeated sequences in DNA. Science, 161, 529–540.

    Article  CAS  PubMed  Google Scholar 

  • Cairns, J. 1963. The chromosome of E. coli. Cold Spr Harb Quant Biol, 28, 43–46.

    Article  Google Scholar 

  • Cavalier-Smith, T. 1978. Nuclear volume control by nucleoskeletal DNA, selection for cell volume and cell growth rate, and the solution of the C-value paradox. J Cell Sci, 34, 247–278.

    CAS  PubMed  Google Scholar 

  • Flavell, R B, Bennett, M D, Smith, J B, and Smith, D B. 1974. Genome size and the proportion of repeated nucleotide sequence DNA in plants. Biochem Genetics, 12, 257–269.

    Article  CAS  Google Scholar 

  • Galau, G A, Chamberlin, M E, Hough, B R, Britten, R J, and Davidson, E H. 1976. Evolution of repetitive and nonrepetitive DNA. In:. Molecular Evolution, ed. Ayala, F. J., pp. 200–224. Sinauer Assoc, Inc. Sunderland, Mass.

    Google Scholar 

  • Hall, H M, and Cléments, F E. 1923. The genus Atriplex. In The North American Species of Artemisia, Crysothamnus, and Atriplex Carnegie Inst, of Wash Publ 326, pp. 235–347. Judd and Detweiler, Inc., Washington, D.C.

    Google Scholar 

  • Harpold, M M, and Craig, S P. 1978. The evolution of nonrepetitive DNA in sea urchins. Differentiation, 10, 7–11.

    Article  CAS  PubMed  Google Scholar 

  • Hinegardner, R. 1976. Evolution of genome size. In. Molecular Evolution. Ed. Ayala, F. J., pp. 179–199. Sinauer Assoc, Inc., Sunderland, Mass.

    Google Scholar 

  • Kiper, M, and Herzfeld, F. 1978. DNA sequence organization in the genome of Petroselium sativum (Umbelliferae). Chromosoma, 65, 335–351.

    Article  CAS  Google Scholar 

  • Kohne, D E. 1970. Evolution of higher organism DNA. Quart Rev Biophysics, 33, 327–375.

    Article  Google Scholar 

  • Laird, C, McConaughy, B L, and McCarthy, B J. 1969. Rate of fixation of nucleotide substitution in evolution. Nature, 224, 149–154.

    Article  CAS  PubMed  Google Scholar 

  • Lee, A S, and Sinsheimer, R L. 1974. A. Cleavage map of bacteriophage Ø×174 genome. Proc Nat Acad Sci USA, 71, 2882–2886.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • McDonnell, M W, Simon, M N, and Studier, E W. 1977. Analysis of restriction fragments of T7 DNA and determination of molecular weight by electrophoresis in neutral and alkaline gels. J Mol Biol, 110, 119–146.

    Article  Google Scholar 

  • Mizuno, S, and MacGregor, H C. 1974. Chromosomes, DNA sequences, and evolution in salamanders of the genus Plethodon. Chromosoma, 48, 239–296.

    Article  CAS  PubMed  Google Scholar 

  • Murray, J G, Belford, H S, and Thompson, W F. 1977. In vitro labelling of single-stranded DNA. Carnegie Inst Wash Yearbook, 76, 262–267.

    Google Scholar 

  • Murray, M G, Cuellar, R E, and Thompson, W F. 1978. DNA sequence organization in the pea genome. Biochemistry, 17, 5781–5790.

    Article  CAS  PubMed  Google Scholar 

  • Murray, M G, Palmer, J D, Cueller, R E, and Thompson, W F. 1979. Deoxyribonucleic acid sequence organization in the mung bean genome. Biochemistry, 18, 5259–5266.

    Article  CAS  PubMed  Google Scholar 

  • Murray, M G, Peters, D L, and Thompson, W F. 1981. Ancient repeated sequences in the pea and mung bean genomes and a model for genome evolution. J Mol Evol (in press).

  • Murray, M G, and Thompson, W F. 1977a. Contaminants affecting plant DNA reassociation. Carnegie Inst Wash Yearbook, 76, 255–259.

    Google Scholar 

  • Murray, M G, and Thompson, W F. 1977b. Single-stranded DNA fragment length determination by alkaline agarose electrophoresis: Applications for DNA renaturation studies. Carnegie Inst Wash Yearbook, 76, 259–267.

    Google Scholar 

  • Narayan, R K J, and Rees, H. 1977. Nuclear DNA divergence among Lathyrus species. Chromosoma, 63, 101–107.

    Article  Google Scholar 

  • Nobs, M A. 1976. Hybridization in Atriplex. Carnegie Inst Wash Yearbook, 75, 421–423.

    Google Scholar 

  • Pearson, W R, Davidson, E H, and Britten, R J. 1977. A program for least squares analysis of reassociation and hybridization data. Nucleic Acids Research, 4, 1727–1735.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rice, N. 1972. Changes in repeated DNA in evolution. Brookhaven Symp Biol, 23, 44–78.

    CAS  PubMed  Google Scholar 

  • Shields, G F, and Straus, N A. 1975. DNA-DNA hybridization studies of birds. Evolution, 29, 159–166.

    Article  CAS  PubMed  Google Scholar 

  • Sibley, C G, and Ahlquist, J E. 1980. The relationships of the “primitive insect eaters” (Aves: Passeriformes) as indicated by DNA × DNA hybridization. Proc 17th International Ornithological Congress (in press).

  • Söhn, U-I, Rothfels, K H, and Straus, N A. 1975. DNA: DNA hybridization studies in black flies. J Mol Evol, 5, 75–85.

    Article  PubMed  Google Scholar 

  • Sparrow, A H, Price, H J, and Underbrink, A G. 1972. A survey of DNA content per cell and per chromosome of prokaryotic and eukaryotic organisms: Some evolutionary considerations. Brookhaven Symp Biol, 23, 451–494.

    CAS  PubMed  Google Scholar 

  • Stein, D B, Thompson, W F, and Belford, H S. 1979. Studies on DNA sequences in the Osmundaceae. J Mol Evol, 13, 215–232.

    Article  CAS  PubMed  Google Scholar 

  • Thompson, W F, and Murray, M G. 1980. Sequence organization in pea and mung bean DNA and a model for genome evolution. In The Plant Genome (Fourth John Innes Symposium), eds. Davies, D. R. and Hopwood, D. A. John Innes Charity, Norwich, England.

  • Wetmur, J G, and Davidson, N. 1968. Kinetics of renaturation of DNA. J Mol Biol, 31, 349–370.

    Article  CAS  PubMed  Google Scholar 

  • Wilson, A C, Carlson, S S, and White, T J. 1977. Biochemical evolution. Ann Rev Biochem, 46, 573–639.

    Article  CAS  PubMed  Google Scholar 

  • Zimmerman, J L, and Goldberg, R B. 1977. DNA sequence organization in the genome of Nicotiana tabacum. Chromosoma, 59, 227–252.

    Article  CAS  Google Scholar 

Download references

Author information

Author notes
  1. Heather S Belford

    Present address: Department of Biochemistry, Boston University, 80 E. Concord St., Boston, MA, 02118, U.S.A.

Authors and Affiliations

  1. Department of Plant Biology, Carnegie Institution of Washington, Stanford, CA 94305, USA

    Heather S Belford & William F Thompson

Authors
  1. Heather S Belford
    View author publications

    Search author on:PubMed Google Scholar

  2. William F Thompson
    View author publications

    Search author on:PubMed Google Scholar

Additional information

This research was supported in part by NSF grant DEB76-83405 and funds from the Carnegie Institution of Washington. This paper is Publication No. 717 from the Department of Plant Biology, and is based on a portion of a dissertation submitted by H.S.B. in partial fulfilment of the Ph.D requirements in the Department of Botany, University of Massachusetts, Amherst.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Belford, H., Thompson, W. Single copy DNA homologies in Atriplex. I. Cross reactivity estimates and the role of deletions in genome evolution. Heredity 46, 91–108 (1981). https://doi.org/10.1038/hdy.1981.9

Download citation

  • Received: 21 July 1980

  • Issue date: 01 February 1981

  • DOI: https://doi.org/10.1038/hdy.1981.9

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

This article is cited by

  • Chromosome number and genome size in Atriplex mollis from southern Tunisia and Atriplex lanfrancoi from Malta (Amaranthaceae)

    • Abderrazak Tlili
    • Hassen Gouja
    • Mohamed Neffati

    Plant Systematics and Evolution (2020)

  • The progress of DNA analyzing techniques and its impact on plant molecular systematics

    • Toru Terachi

    Journal of Plant Research (1993)

  • Molecular divergence between North Atlantic and Indo-West Pacific Cladophora albida (Cladophorales: Chlorophyta) isolates as indicated by DNA-DNA hybridization

    • P. V. M. Bot
    • R. W. Holton
    • C. van den Hoek

    Marine Biology (1989)

  • Non-equivalency of genera inAngiospermae: Evidence from DNA hybridization studies

    • A. S. Antonov
    • K. M. Valiejo-Roman
    • N. A. Beridze

    Plant Systematics and Evolution (1988)

  • Single copy DNA homologies in Atriplex. II. Hybrid thermal stabilities and molecular phylogeny

    • Heather S Belford
    • William F Thompson

    Heredity (1981)

Download PDF

Advertisement

Explore content

  • Research articles
  • Reviews & Analysis
  • News & Comment
  • Podcasts
  • Current issue
  • Collections
  • Follow us on Twitter
  • Sign up for alerts
  • RSS feed

About the journal

  • Journal Information
  • Open access publishing
  • About the Editors
  • Contact
  • About the Partner
  • For Advertisers
  • Subscribe

Publish with us

  • For Authors & Referees
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

Heredity (Heredity)

ISSN 1365-2540 (online)

ISSN 0018-067X (print)

nature.com sitemap

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited