Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

Heredity
  • View all journals
  • Search
  • Log in
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. heredity
  3. original article
  4. article
S-allele sequence diversity in natural populations of Solanum carolinense (Horsenettle)
Download PDF
Download PDF
  • Original Article
  • Published: 01 October 1995

S-allele sequence diversity in natural populations of Solanum carolinense (Horsenettle)

  • Adam D Richman1 nAff4,
  • Teh-Hui Kao2,
  • Stephen W Schaeffer3 &
  • …
  • Marcy K Uyenoyama1 

Heredity volume 75, pages 405–415 (1995)Cite this article

  • 1339 Accesses

  • 92 Citations

  • Metrics details

Abstract

S-allele diversity in Solanum carolinense was surveyed in two natural populations, located in Tennessee and North Carolina, with a molecular assay to determine the genotype of individual plants. A total of 13 different S-alleles were identified and sequenced. There is high overlap between the two populations sampled, with 10 alleles shared in common, one allele found only in Tennessee, and two found only in North Carolina. The number of alleles in this species appears to be extremely low compared with other species with gametophytic self-incompatibility. Sequence comparisons show that most alleles are extremely different one from another in their primary sequence and a phylogenetic analysis indicates extensive trans-specific evolution of S-lineages. In addition, some alleles appear to be derived much more recently. The implications of these observations are discussed in the light of recent theoretical results on S-allele population diversity and persistence.

Similar content being viewed by others

Genetic diversity and population structure of Alternaria species from tomato and potato in North Carolina and Wisconsin

Article Open access 23 August 2021

Sequence variations, flanking region mutations, and allele frequency at 31 autosomal STRs in the central Indian population by next generation sequencing (NGS)

Article Open access 01 December 2021

Genetic diversity, population structure, and DNA fingerprinting of Ailanthus altissima var. erythrocarpa based on EST-SSR markers

Article Open access 07 November 2023

Article PDF

References

  • Ai, Y, Singh, A, Coleman, C E, Ioerger, T R, Kheyrpour, A, and Kao, T-H. 1990. Self-incompatibility in Petunia inflata: isolation and characterization of cdnas encoding three 5-allele-associated proteins. Sex Plant Reprod, 3, 130–138.

    Article  Google Scholar 

  • Anderson, M A, Cornish, E C, Mau, S-L, Williams, E G, Hoggart, R, Atkinson, A, Bonig, I, Grego, B, Simpson, R, Roche, P J, Haley, J D, Penschow, J D, Niall, H D, Tregear, G W, Coghlan, J P, Crawford, R J, and Clarke, A E. 1986. Cloning of cdna for a stylar glycoprotein associated with expression of self-incompatibility in Nicotiana alata. Nature, 321, 38–44.

    Article  CAS  Google Scholar 

  • Brace, J, King G J and Ockendon, D J. 1993. Development of a method for the identification of S-alleles in Brassica oleracea based on digestion of PCR-amplified restriction endonucleases. Sex Plant Reprod, 6, 133–138.

    Article  Google Scholar 

  • Brace, J, King G J and Ockendon, D J. 1994. A molecular approach to the identification of S-alleles in Brassica oleracea. Sex Plant Reprod, 7, 203–208.

    Article  Google Scholar 

  • Campbell, J M, and Lawrence, M J. 1981. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. II. The number and frequency of S-alleles in a natural population (R106). Heredity, 46, 81–90.

    Article  Google Scholar 

  • Clark, A G. 1993. Evolutionary inferences from molecular characterization of self-incompatibility alleles. In: Takahata, N. and Clark, A. G. (eds) Mechanisms of Molecular Evolution, pp. 79–108. Sinauer Associates, Sunderland, MA.

    Google Scholar 

  • Clark, A G, and Kao, T-H. 1991. Excess nonsynonymous substitution at shared polymorphic sites among self-incompatibility alleles of Solanaceae. Proc Natl Acad Sci USA, 88, 9823–9827.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Clarke, A E, and Newbigin, E. 1993. Molecular aspects of self-incompatibility in flowering plants. Ann Rev Genet, 27, 257–279.

    Article  CAS  PubMed  Google Scholar 

  • Emerson, S. 1938. The genetics of self-incompatibility in Oenothera organensis. Genetics, 23, 190–202.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Emerson, S. 1939. A preliminary survey of the Oenothera organensis population. Genetics, 24, 524–537.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Foote, H C C, Ride, J P, Franklin-Tong, V E, Walker, E A, Lawrence, M J, and Franklin, F C. 1994. Cloning and expression of a novel class of self-incompatibility (S) gene from Papaver rhoeas L. Proc Natl Acad Sci USA, 91, 2265–2269.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Franklin-Tong, V E, and Franklin, F C H. 1993. Gametophytic self-incompatibility: contrasting mechanisms for Nicotiana and Papaver. Trends Cell Biol, 3, 340–345.

    Article  CAS  PubMed  Google Scholar 

  • Hinata, K, Watanabe, M, Toriyama, K, and Isogai, A. 1993. A review of recent studies on homomorphic self-incompatibility. Int Rev Cytol, 143, 257–296.

    Article  CAS  Google Scholar 

  • Ioerger, T R, Clark, A G, and Kao, T-H. 1990. Polymorphism at the self-incompatibility locus in Solanaceae predates speciation. Proc Natl Acad Sci USA, 87, 9732–9735.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ioerger, T R, Gohlke, J R, Xu, B, and Kao, T-H. 1991. Primary structural features of the self-incompatibility protein in Solanaceae. Sex Plant Reprod, 4, 81–87.

    Article  Google Scholar 

  • Jost, W, Bak, H, Glund, K, Terpstra, P, and Beintema, J J. 1991. Amino acid sequence of an extracellular, phosphate-starvation-induced ribonuclease from cultured tomato (Lycopersicon esculentum) cells. Eur J Biochem, 198, 1–6.

    Article  CAS  PubMed  Google Scholar 

  • Kaufmann, H, Salamini, F, and Thompson, R D. 1991. Sequence variability and gene structure at the self-incompatibility locus of Solanum tuberosum. Mol Gen Genet, 226, 457–466.

    Article  CAS  PubMed  Google Scholar 

  • Kheyrpour, A, Bintrim, S B, Ioerger, T R, Remy, R, Hammond, S A, and Kao, T-H. 1990. Sequence diversity of pistil 5-proteins associated with gametophytic self-incompatibility in Nicotiana alata. Sex Plant Reprod, 3, 88–97.

    Google Scholar 

  • Kirch, H H, Uhrig, H, Lottspeich, F, Salamini, F, and Thompson, R D. 1989. Characterization of proteins associated with self-incompatibility in Solanum tuberosum. Theor Appl Genet, 78, 581–588.

    Article  CAS  PubMed  Google Scholar 

  • Kumar, S, Tamura, K, and Nei, M. 1993. MEGA: Molecular Evolutionary Genetics Analysis, version 1.02. The Pennsylvania State University, University Park, PA.

  • Lane, M D, and Lawrence, M J. 1993. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. VII. The number of S-alleles in the species. Heredity, 71, 596–602.

    Article  Google Scholar 

  • Lawrence, M J. 1975. The genetics of self-incompatibility in Papaver rhoeas. Proc R Soc Lond B, 188, 275–285.

    Article  Google Scholar 

  • Lawrence, M J, and Franklin-Tong, V E. 1994. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. IX. Evidence of an extra effect of selection acting on the 5-locus. Heredity, 72, 353–364.

    Article  Google Scholar 

  • Lawrence, M J, Lane, M D, O'Donnell, S, and Franklin-Tong, V E. 1993. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. V. Cross-classification of the S-alleles of samples from three natural populations. Heredity, 71, 581–590.

    Article  Google Scholar 

  • Lawrence, M J, and O'Donnell, S. 1981. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. III. The number and frequency of S-alleles in two further natural populations (R102 and R104). Heredity, 47, 53–61.

    Article  Google Scholar 

  • Lawrence, M J, O'Donnell, S, Lane, M D, and Marshall, D F. 1994. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. VIII. Sampling effects as a possible cause of unequal allele frequencies. Heredity, 72, 345–352.

    Article  Google Scholar 

  • Lee, H-S, Huang, S, and Kao, T-H. 1994. S proteins control rejection of incompatible pollen in Petunia inflata. Nature, 367, 560–563.

    Article  CAS  PubMed  Google Scholar 

  • Lee, H-S, Singh, A, and Kao, T-H. 1992. RNase X2, a pistil-specific ribonuclease from Petunia inflata, shares sequence similarity with solanaceous S proteins. Plant Mol Biol, 20, 1131–1141.

    Article  CAS  PubMed  Google Scholar 

  • Levin, D A. 1993. S-gene polymorphism in Phlox drum-mondii. Heredity, 71, 193–198.

    Article  CAS  Google Scholar 

  • Li, X, Nield, J, Hayman, D, and Langridge, P. 1994. Cloning a putative self-incompatibility gene from the pollen of the grass Phalaris coerulescens. Plant Cell, 6, 1923–1932.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mantel, N. 1974. Approaches to a health research occupancy problem. Biometrics, 30, 355–362.

    Article  CAS  PubMed  Google Scholar 

  • Nagylaki, T. 1975. The deterministic behavior of self-incompatibility alleles. Genetics, 79, 545–550.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Nasrallah, J B, Kao, T-H, Chen, C-H, Goldberg, M L, and Nasrallah, M E. 1987. Amino-acid sequence of glycoproteins encoded by three alleles of the 5 locus of Brassica oleracea. Nature, 326, 617–619.

    Article  CAS  Google Scholar 

  • O'Donnell, S, Lane, M D, and Lawrence, M J. 1993. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. VI. Estimation of the overlap between the allelic complements of a pair of populations. Heredity, 71, 591–595.

    Article  Google Scholar 

  • O'Donnell, S, and Lawrence, M J. 1984. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. IV. The estimation of the number of alleles in a population. Heredity, 53, 495–507.

    Article  Google Scholar 

  • Ockendon, D J. 1974. Distribution of self-incompatibility alleles and breeding structure of open-pollinated cultivars of Brussels sprouts. Heredity, 33, 159–171.

    Article  Google Scholar 

  • Paxman, G J. 1963. The maximum likelihood estimation of the number of self-sterility alleles in a population. Genetics, 48, 1029–1032.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Royo, J, Kowyama, Y, and Clarke, A E. 1994. Cloning and nucleotide sequence of two 5-RNases from Lyco-persicon peruvianum (L.) Mill. Plant Physiol, 105, 751–752.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Saba-El-Leil, M K, Rivard, S, Morse, D, and Cappado-Cia, M. 1994. The 511 and 513 self-incompatibility alleles in Solanum chacoense Bitt. are remarkably similar. Plant Mol Biol, 24, 571–583.

    Article  CAS  PubMed  Google Scholar 

  • Saitou, N, and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol, 4, 406–425.

    CAS  PubMed  Google Scholar 

  • Taylor, C B, and Green, P J. 1991. Genes with homology to fungal and 5-gene RNases are expressed in Arabi-dopsis thaliana. PI Physiol, 96, 980–984.

    Article  CAS  Google Scholar 

  • Uyenoyama, M K. 1991. On the evolution of genetic incompatibility systems. VI. A three-locus modifier model for the origin of gametophytic self-incompatibility. Genetics, 128, 453–469.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Uyenoyama, M K. 1995. A generalized least squares estimate for the origin of sporophytic self-incompatibility. Genetics, 139, 975–992.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Vekemans, X, and Slatkin, M. 1994. Gene and allelic genealogies at a gametophytic self-incompatibility locus. Genetics, 137, 1157–1165.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wright, S. 1939. The distribution of self-sterility alleles in populations. Genetics, 24, 538–552.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wright, S. 1960. On the number of self-incompatibility alleles maintained in equilibrium by a given mutation rate in a population of a given size: a re-examination. Biometrics, 16, 61–85.

    Article  Google Scholar 

  • Wright, S. 1965. The distribution of self-incompatibility alleles in populations. Evolution, 18, 609–619.

    Article  Google Scholar 

  • Xu, B, Mu, J, Nevins, D L, Grun, P, and Kao, T-H. 1990. Cloning and sequencing of cdnas encoding two self-incompatibility associated proteins in Solanum chacoense. Mol Gen Genet, 224, 341–346.

    Article  CAS  PubMed  Google Scholar 

  • Yokoyama, S, and Hetherington, L E. 1982. The expected number of self-incompatibility alleles in finite plant populations. Heredity, 48, 299–303.

    Article  Google Scholar 

Download references

Author information

Author notes
  1. Adam D Richman

    Present address: Department of Biology 0116, The University of California at San Diego, La Jolla, CA, 92093-0116, USA

Authors and Affiliations

  1. Department of Zoology, Box 90325, Duke University, Durham, 27708-0325, NC, USA

    Adam D Richman & Marcy K Uyenoyama

  2. Department of Biochemistry and Molecular Biology and Institute of Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, 16802, PA, USA

    Teh-Hui Kao

  3. Department of Biology and Institute of Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, 16802, PA, USA

    Stephen W Schaeffer

Authors
  1. Adam D Richman
    View author publications

    Search author on:PubMed Google Scholar

  2. Teh-Hui Kao
    View author publications

    Search author on:PubMed Google Scholar

  3. Stephen W Schaeffer
    View author publications

    Search author on:PubMed Google Scholar

  4. Marcy K Uyenoyama
    View author publications

    Search author on:PubMed Google Scholar

Rights and permissions

Reprints and permissions

About this article

Cite this article

Richman, A., Kao, TH., Schaeffer, S. et al. S-allele sequence diversity in natural populations of Solanum carolinense (Horsenettle). Heredity 75, 405–415 (1995). https://doi.org/10.1038/hdy.1995.153

Download citation

  • Received: 16 March 1995

  • Issue date: 01 October 1995

  • DOI: https://doi.org/10.1038/hdy.1995.153

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Keywords

  • RT-PCR
  • S-allele diversity
  • self-incompatibility
  • Solanum carolinense

This article is cited by

  • Nutrient stress can have opposite effects on the ability of plants to tolerate foliar herbivory and floral herbivory

    • Michael J. Wise
    • Erika L. Mudrak

    Oecologia (2023)

  • Simple Sequence Repeat-Based Genetic Diversity and Analysis of Molecular Variance among on-Farm Native Potato Landraces from the Influence Zone of Camisea Gas Project, Northern Ayacucho, Peru

    • Germán De la Cruz
    • Tomás Yuret Miranda
    • Gisella Orjeda

    American Journal of Potato Research (2020)

  • Herbivory and inbreeding affect growth, reproduction, and resistance in the rhizomatous offshoots of Solanum carolinense (Solanaceae)

    • Chad T. Nihranz
    • Rebecca L. Kolstrom
    • Andrew G. Stephenson

    Evolutionary Ecology (2019)

  • Functional gametophytic self-incompatibility in a peripheral population of Solanum peruvianum (Solanaceae)

    • J S Miller
    • J L Kostyun

    Heredity (2011)

  • Molecular and genetic characterization of novel S-RNases from a natural population of Nicotiana alata

    • Juan A. Roldán
    • Rodrigo Quiroga
    • Ariel Goldraij

    Plant Cell Reports (2010)

Download PDF

Associated content

Focus

Evolution of Plant Mating Systems: Homomorphic Self-incompatibility

Advertisement

Explore content

  • Research articles
  • Reviews & Analysis
  • News & Comment
  • Podcasts
  • Current issue
  • Collections
  • Follow us on X
  • Sign up for alerts
  • RSS feed

About the journal

  • Journal Information
  • Open access publishing
  • About the Editors
  • Contact
  • About the Partner
  • For Advertisers
  • Subscribe

Publish with us

  • For Authors & Referees
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

Heredity (Heredity)

ISSN 1365-2540 (online)

ISSN 0018-067X (print)

nature.com footer links

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited