Table 1 Summary of assemblies and annotations of the Spartina maritima and Spartina alterniflora complementary DNA libraries
Analysis | Assemblies | Annotations | |||
|---|---|---|---|---|---|
Number of reads used in the assembly | Number of contigs | Number of singletons | tBLASTX Oryza sativa | tBLASTX Poaceae | |
S. maritima (non-normalized) | |||||
Leaves | 273 659 | 5866 | 63 064 | 5237 (3143) | 5505 (3825) |
Roots | 131 727 | 5910 | 43 945 | 5275 (3029) | 5551 (3824) |
Leaves and roots | 405 386 | 12 309 | 83 878 | 11 118 (5705) | 11 718 (7290) |
S. maritima (normalized) | |||||
Leaves | 95 045 | 3654 | 43 993 | 1797 (1589) | 2069 (1938) |
Roots | 264 114 | 13 315 | 74 418 | 9948 (7193) | 10 550 (9115) |
Leaves and roots | 359 159 | 17 182 | 89 765 | 10 805 (8195) | 12 518 (10 629) |
S. maritima total (non-normalized+normalized) | |||||
Leaves | 371 111 | 10 098 | 79 436 | 8517 (4821) | 9002 (6100) |
Roots | 398 991 | 19 069 | 84 789 | 17 409 (8485) | 18 162 (11 149) |
Total (all organs and all cDNAs) | 755 309 | 25 239 | 114 857 | 16 137 (9958) | 17 307 (13 786) |
S. alterniflora | |||||
Leaves | 140 733 | 3217 | 30 480 | 2995 (1806) | 3127 (2169) |
Roots | 203 990 | 11 155 | 43 904 | 10 805 (5 281) | 11 201 (6811) |
Leaves and roots | 344 723 | 14 317 | 58 298 | 13 919 (6430) | 14 123 (8370) |
S. maritima and S. alterniflora | |||||
Leaves | 511 844 | 13 824 | 93 274 | 12 246 (5999) | 12 910 (7773) |
Roots | 602 981 | 29 187 | 102 638 | 28 164 (10 268) | 29 054 (14 135) |
Total | 1 114 825 | 38 478 | 153 409 | 36 549 (11 776) | 38 089 (16 753) |
