Table 3 The parameters and statistical significances of branch-site tests

From: The origin and functional transition of P34

Foreground branch

Parameters (ω1=1; 0<ω0<1; ω2 to be estimated)

LRT

Positive selected sites

 

e

p1

p2

ω0

ω2

2ΔlnL

P-value

 

Branch IV-III

0.78

0.17

0.05

0.14

Infinity

5.48

0.019

69H*

Branch III-I

0.70

0.16

0.14

0.14

4.75

6.36

0.012

142S*, 214N*

Branch I-P34

0.75

0.15

0.10

0.14

Infinity

7.38

0.007

114T*, 130F*

  1. Abbreviation: LRT, likelihood ratio test.
  2. *P > 0.95, where P is the Bayes Empirical Bayes posterior probability.
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