Table 1 Maximum likelihood reconstruction tree parameters

From: The discovery of Foxl2 paralogs in chondrichthyan, coelacanth and tetrapod genomes reveals an ancient duplication in vertebrates

Data

Substitution model

Tree searching operations

Starting tree

Branch support

Forkhead

LG

Best of NNI

Neighbor- joining

aLRT (SH-like)

Foxl2

Dayhoff

Best of SPR

Neighbor- joining

aLRT (SH-like)

  1. Abbreviations: aLRT, approximate likelihood ratio test; Foxl2, forkhead box L2; LG, Le and Gascuel; NNI, nearest neighbor interchange; SH, Shimodaira-Hasegawa; SPR, subtree pruning and regrafting.
Back to article page