Table 1 Contig statistics

From: Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads

Biotype

n reads (M)

Contigs >100 bp

Contigs >1 kb

  

nb

assbl. Mb

% reads

N50

nb

assbl. Mb

% reads

M. sativa

3.68

21 110

5.98

41.29

380

669

1.09

18.61

T. pratense

7.07

29 298

8.75

40.25

415

1107

2.09

19.04

V. cracca

18.29

21 907

7.41

39.00

520

1135

2.25

26.00

P. sativum

6.26

21 123

7.13

49.34

510

1055

2.12

39.1

M. lupulina

7.56

20 932

7.01

48.66

508

1075

2.11

37.14

L. corniculatus

3.34

25 772

7.43

47.95

403

869

1.43

21.99

Melilotus spp.

3.68

23 792

6.9

44.21

408

879

1.41

18.83

S. varia

2.96

23 340

6.75

50.18

402

839

1.33

24.35

C. scoparius

5.01

27 081

7.84

33.55

410

1026

1.65

13.55

O. spinosa

3.67

25 170

7.4

45.84

418

977

1.56

20.46

L. pratensis

8.98

83 344

21.41

53.2

331

2211

3.42

22.67

  1. For each biotype, the number of unmapped reads in million (n reads) used for the assembly is indicated along with several statistics describing the properties for two contig length cutoffs (100 bp and 1 kb), namely, the number of obtained contigs (nb), their cumulative length (assbl. Mb), the percentage of reads (% reads) that could be mapped to the contigs and the N50 value.
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