Abstract
The chromosome 16p13.11 heterozygous deletion is associated with a diverse array of neuropsychiatric disorders including intellectual disabilities, autism, schizophrenia, epilepsy and attention-deficit hyperactivity disorder. However the clinical significance of its reciprocal duplication is not clearly defined yet. We evaluated 1645 consecutive pediatric patients with various developmental disorders by high-resolution microarray-based comparative genomic hybridization and identified four deletions and eight duplications within the 16p13.11 region, representing ∼0.73% (12/1645) of the patients analyzed. Recurrent clinical features in these patients include mental retardation/intellectual disability, autism, seizure, dysmorphic feature or multiple congenital anomalies. Our data expand the spectrum of the clinical findings in patients with these genomic abnormalities and provide further support for the pathogenic involvement of this duplication in patients who carry them.
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References
Bailey, J. A. & Eichler, E. E. Primate segmental duplications: crucibles of evolution, diversity and disease. Nat. Rev. Genet 7, 552–564 (2006).
Slavotinek, A. M. Novel microdeletion syndromes detected by chromosome microarrays. Hum. Genet. 124, 1–17 (2008).
Martin, J., Han, C., Gordon, L. A., Terry, A., Prabhakar, S., She, X. et al. The sequence and analysis of duplication-rich human chromosome 16. Nature 432, 988–994 (2004).
Ballif, B. C., Hornor, S. A., Jenkins, E., Madan-Khetarpal, S., Surti, U., Jackson, K. E. et al. Discovery of a previously unrecognized microdeletion syndrome of 16p11.2–p12.2. Nat. Genet. 39, 1071–1073 (2007).
Weiss, L. A., Shen, Y., Korn, J. M., Arking, D. E., Miller, D. T., Fossdal, R. et al. Association between microdeletion and microduplication at 16p11.2 and autism. N. Engl. J. Med. 358, 667–675 (2008).
Hannes, F. D., Sharp, A. J., Mefford, H. C., de Ravel, T., Ruivenkamp, C. A., Breuning, M. H., Fryns, J. P. et al. Recurrent reciprocal deletions and duplications of 16p13.11: the deletion is a risk factor for MR/MCA while the duplication may be a rare benign variant. J. Med. Genet. 46, 223–232 (2008).
Law, L. W., Lau, T. K., Fung, T. Y., Leung, T. Y., Wang, C. C. & Choy, K. W. De novo 16p13.11 microdeletion identified by high-resolution array CGH in a fetus with increased nuchal translucency. BJOG 116, 339–343 (2009).
Ullmann, R., Turner, G., Kirchhoff, M., Chen, W., Tonge, B, Rosenberg, C. et al. Array CGH identifies reciprocal 16p13.1 duplications and deletions that predispose to autism and/or mental retardation. Hum. Mutat. 28, 674–682 (2007).
de Kovel, C. G., Trucks, H., Helbig, I., Mefford, H. C., Baker, C., Leu, C. et al. Recurrent microdeletions at 15q11.2 and 16p13.11 predispose to idiopathic generalized epilepsies. Brain 133, 23–32 (2010).
Mefford, H. C., Cooper, G. M., Zerr, T., Smith, J. D., Baker, C., Shafer, N. et al. A method for rapid, targeted CNV genotyping identifies rare variants associated with neurocognitive disease. Genome Res. 19, 1579–1585 (2009).
Heinzen, E. L., Radtke, R. A., Urban, T. J., Cavalleri, G. L., Depondt, C., Need, A. C. et al. Rare deletions at 16p13.11 predispose to a diverse spectrum of sporadic epilepsy syndromes. Am. J. Hum. Genet. 86, 707–718 (2010).
Ingason, A., Rujescu, D., Cichon, S., Sigurdsson, E, Sigmundsson, T, Pietiläinen, O P et al. Copy number variations of chromosome 16p13.1 region associated with schizophrenia. Mol. Psychiatry 16, 17–25 (2011).
Mefford, H. C., Muhle, H., Ostertag, P., von Spiczak, S., Buysse, K., Baker, C. et al. Genome-wide copy number variation in epilepsy: novel susceptibility loci in idiopathic generalized and focal epilepsies. PLoS Genet. 6, e1000962 (2010).
Williams, N. M., Zaharieva, I., Martin, A., Langley, K., Mantripragada, K., Fossdal, R. et al. Rare chromosomal deletions and duplications in attention-deficit hyperactivity disorder: a genome-wide analysis. Lancet 376, 1401–1408 (2010).
Yu, S., Bittel, D. C., Kibiryeva, N., Zwick, D. L. & Cooley, L. D. Validation of the Agilent 244 K oligonucleotide array-based comparative genomic hybridization platform for clinical cytogenetic diagnosis. Am. J. Clin. Pathol. 132, 349–360 (2009).
Yu, S., Kielt, M., Stegner, A. L., Kibiryeva, N., Bittel, D. C. & Cooley, L. D. Quantitative real-time polymerase chain reaction for the verification of genomic imbalances detected by microarray-based comparative genomic hybridization. Genet. Test Mol. Biomarkers 13, 751–760 (2009).
Itsara, A., Cooper, G. M., Baker, C., Girirajan, S., Li, J., Absher, D. et al. Population analysis of large copy number variants and hotspots of human genetic disease. Am. J. Hum. Genet. 84, 148–161 (2009).
Kirov, G., Grozeva, D., Norton, N., Ivanov, D., Mantripragada, K. K., Holmans, P. et al. Support for the involvement of large copy number variants in the pathogenesis of schizophrenia. Hum. Mol. Genet. 18, 1497–1503 (2009).
ISC. Rare chromosomal deletions and duplications increase risk of schizophrenia. Nature 455, 237–241 (2008).
Chan, Y. W., Fava, L. L., Uldschmid, A., Schmitz, M. H., Gerlich, D. W., Nigg, E. A. et al. Mitotic control of kinetochore-associated dynein and spindle orientation by human spindly. J. Cell Biol. 185, 859–874 (2009).
Feng, Y. & Walsh, C. A. Mitotic spindle regulation by Nde1 controls cerebral cortical size. Neuron 44, 279–293 (2004).
Pawlisz, A. S., Mutch, C., Wynshaw-Boris, A., Chenn, A., Walsh, C. A. & Feng, Y. Lis1-Nde1-dependent neuronal fate control determines cerebral cortical size and lamination. Hum. Mol. Genet. 17, 2441–2455 (2008).
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Ramalingam, A., Zhou, XG., Fiedler, S. et al. 16p13.11 duplication is a risk factor for a wide spectrum of neuropsychiatric disorders. J Hum Genet 56, 541–544 (2011). https://doi.org/10.1038/jhg.2011.42
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DOI: https://doi.org/10.1038/jhg.2011.42
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