Figure 6: Selected conserved patterns.
From: Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
Column one shows the conpat unique ID. Column two shows the sequence logo representation of conpat weight matrix. Column three shows fungal binding factors with sequence similarity to the conpat. Columns four and five show the number of genes with a co-occurrence of conpat upstream and downstream. Column six shows the preference for co-occurring preferentially 5′ or 3′ of the gene. Column seven shows the fraction of co-occurrences overlapping three-way conserved regions. Column eight shows the preference for co-occurring on a particular strand relative to the gene. Column nine shows COG categories showing significant enrichment (the number of genes with co-occurring conpats in the category is indicated in parentheses). Enrichment results for yeast orthologue cellular location are available in the Supplementary Information. Single asterisk, P < 1 × 10-3; double asterisk, P < 1 × 10-4; triple asterisk, P < 1 × 10-5. bHLH, basic helix-loop-helix.
